Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.02■□□□□ 0.48
UPF3BQ9BZI7 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.02■□□□□ 0.48
UPF3BQ9BZI7 SPDYE22P-201ENST00000582158 798 ntBASIC18.02■□□□□ 0.48
UPF3BQ9BZI7 INTS4P2-202ENST00000614726 2019 ntBASIC18.02■□□□□ 0.48
UPF3BQ9BZI7 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.02■□□□□ 0.48
UPF3BQ9BZI7 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
UPF3BQ9BZI7 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 SLC7A15P-201ENST00000424028 1363 ntBASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
UPF3BQ9BZI7 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 MIR661-201ENST00000384842 89 ntBASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 SPTLC1P1-201ENST00000447199 261 ntBASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 AC120045.2-201ENST00000567334 178 ntBASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
UPF3BQ9BZI7 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 CRB3P1-201ENST00000449338 276 ntBASIC18■□□□□ 0.47
UPF3BQ9BZI7 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 SERBP1P5-201ENST00000510079 1181 ntBASIC18■□□□□ 0.47
UPF3BQ9BZI7 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
UPF3BQ9BZI7 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC18■□□□□ 0.47
UPF3BQ9BZI7 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
UPF3BQ9BZI7 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
UPF3BQ9BZI7 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
UPF3BQ9BZI7 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
UPF3BQ9BZI7 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
UPF3BQ9BZI7 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
UPF3BQ9BZI7 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
UPF3BQ9BZI7 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms