Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC138701.2-201ENST00000553634 226 ntBASIC14.1□□□□□ -0.15
COL5A1P20908 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 AL022344.2-201ENST00000568976 968 ntBASIC14.1□□□□□ -0.15
COL5A1P20908 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC14.1□□□□□ -0.15
COL5A1P20908 AC007326.1-201ENST00000604539 458 ntBASIC14.1□□□□□ -0.15
COL5A1P20908 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
COL5A1P20908 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
COL5A1P20908 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.1□□□□□ -0.15
COL5A1P20908 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.1□□□□□ -0.15
COL5A1P20908 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
COL5A1P20908 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.09□□□□□ -0.15
COL5A1P20908 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.09□□□□□ -0.15
COL5A1P20908 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.09□□□□□ -0.15
COL5A1P20908 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.09□□□□□ -0.15
COL5A1P20908 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.09□□□□□ -0.15
COL5A1P20908 MIR5196-201ENST00000578146 115 ntBASIC14.09□□□□□ -0.15
COL5A1P20908 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
COL5A1P20908 AC091951.1-201ENST00000512854 2465 ntBASIC14.09□□□□□ -0.15
COL5A1P20908 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
COL5A1P20908 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 AC009093.10-201ENST00000641956 1442 ntBASIC14.09□□□□□ -0.15
COL5A1P20908 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
COL5A1P20908 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
COL5A1P20908 KHSRPP1-201ENST00000427983 1768 ntBASIC14.09□□□□□ -0.15
COL5A1P20908 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL5A1P20908 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.09□□□□□ -0.15
COL5A1P20908 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL5A1P20908 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL5A1P20908 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.15
COL5A1P20908 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL5A1P20908 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
COL5A1P20908 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC14.08□□□□□ -0.15
COL5A1P20908 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC14.08□□□□□ -0.15
COL5A1P20908 ALG1L13P-202ENST00000519320 584 ntBASIC14.08□□□□□ -0.15
COL5A1P20908 RN7SL665P-201ENST00000578793 300 ntBASIC14.08□□□□□ -0.15
COL5A1P20908 AC127024.7-201ENST00000625101 200 ntBASIC14.08□□□□□ -0.15
COL5A1P20908 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL5A1P20908 AC013726.1-201ENST00000563747 2285 ntBASIC14.08□□□□□ -0.15
COL5A1P20908 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL5A1P20908 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.08□□□□□ -0.15
COL5A1P20908 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.08□□□□□ -0.16
COL5A1P20908 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
COL5A1P20908 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 HLA-DMA-203ENST00000395305 777 ntBASIC14.08□□□□□ -0.16
COL5A1P20908 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC14.08□□□□□ -0.16
COL5A1P20908 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC14.08□□□□□ -0.16
COL5A1P20908 AL354861.1-201ENST00000445213 355 ntBASIC14.08□□□□□ -0.16
COL5A1P20908 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
COL5A1P20908 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC14.08□□□□□ -0.16
COL5A1P20908 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL5A1P20908 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC14.08□□□□□ -0.16
COL5A1P20908 KRT8P1-201ENST00000557533 1207 ntBASIC14.08□□□□□ -0.16
COL5A1P20908 DRG2-220ENST00000583355 891 ntTSL 3 BASIC14.08□□□□□ -0.16
COL5A1P20908 MIR2392-201ENST00000584881 84 ntBASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms