Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLHC1Q8NHS4 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLHC1Q8NHS4 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 AC104794.3-201ENST00000566840 1248 ntBASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 SRD5A3P1-201ENST00000603021 949 ntBASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 AL391069.4-201ENST00000609583 481 ntBASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 AC004790.1-201ENST00000612686 536 ntBASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 AC106028.4-201ENST00000614509 607 ntBASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 AC093512.1-201ENST00000617969 520 ntBASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLHC1Q8NHS4 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 AC139530.3-201ENST00000620344 690 ntBASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLHC1Q8NHS4 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms