Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 RER1-203ENST00000378513 3000 ntTSL 3 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 KRT17P5-201ENST00000332088 839 ntBASIC10.21□□□□□ -0.77
CSMD3Q7Z407 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 AC131206.1-201ENST00000538078 1211 ntBASIC10.21□□□□□ -0.77
CSMD3Q7Z407 MIR3180-2-201ENST00000581748 88 ntBASIC10.21□□□□□ -0.77
CSMD3Q7Z407 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 IGHV1-12-201ENST00000518307 205 ntBASIC10.21□□□□□ -0.77
CSMD3Q7Z407 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC10.21□□□□□ -0.77
CSMD3Q7Z407 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 ZBTB45P1-201ENST00000452761 1456 ntBASIC10.21□□□□□ -0.78
CSMD3Q7Z407 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC10.21□□□□□ -0.78
CSMD3Q7Z407 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 JTB-202ENST00000356648 1040 ntTSL 2 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 AC006529.1-201ENST00000459978 637 ntBASIC10.2□□□□□ -0.78
CSMD3Q7Z407 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 AC003686.1-201ENST00000550956 1034 ntBASIC10.2□□□□□ -0.78
CSMD3Q7Z407 AC006483.2-201ENST00000609813 515 ntBASIC10.2□□□□□ -0.78
CSMD3Q7Z407 AC027601.3-201ENST00000622907 509 ntBASIC10.2□□□□□ -0.78
CSMD3Q7Z407 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
CSMD3Q7Z407 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC10.2□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms