Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCPP55072 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCPP55072 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCPP55072 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
VCPP55072 INTS4P2-202ENST00000614726 2019 ntBASIC16.21■□□□□ 0.18
VCPP55072 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VCPP55072 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.21■□□□□ 0.18
VCPP55072 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
VCPP55072 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
VCPP55072 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
VCPP55072 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.2■□□□□ 0.18
VCPP55072 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 AL121723.1-201ENST00000445194 1519 ntBASIC16.2■□□□□ 0.18
VCPP55072 LINC00528-201ENST00000600723 2160 ntBASIC16.2■□□□□ 0.18
VCPP55072 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VCPP55072 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VCPP55072 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.2■□□□□ 0.18
VCPP55072 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
VCPP55072 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VCPP55072 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
VCPP55072 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VCPP55072 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.2■□□□□ 0.18
VCPP55072 AC009486.1-201ENST00000569860 813 ntBASIC16.2■□□□□ 0.18
VCPP55072 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.2■□□□□ 0.18
VCPP55072 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VCPP55072 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCPP55072 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VCPP55072 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.19■□□□□ 0.18
VCPP55072 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VCPP55072 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 CICP23-201ENST00000605013 2741 ntBASIC16.19■□□□□ 0.18
VCPP55072 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.19■□□□□ 0.18
VCPP55072 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.19■□□□□ 0.18
VCPP55072 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VCPP55072 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VCPP55072 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.19■□□□□ 0.18
VCPP55072 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VCPP55072 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC16.19■□□□□ 0.18
VCPP55072 RPL5P21-201ENST00000404620 815 ntBASIC16.19■□□□□ 0.18
VCPP55072 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
VCPP55072 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.19■□□□□ 0.18
VCPP55072 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.19■□□□□ 0.18
VCPP55072 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.19■□□□□ 0.18
VCPP55072 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.19■□□□□ 0.18
VCPP55072 IMP3P2-201ENST00000489760 475 ntBASIC16.19■□□□□ 0.18
VCPP55072 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VCPP55072 AC023310.1-201ENST00000554836 735 ntBASIC16.19■□□□□ 0.18
VCPP55072 AP006547.1-201ENST00000563435 692 ntBASIC16.19■□□□□ 0.18
VCPP55072 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.19■□□□□ 0.18
VCPP55072 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VCPP55072 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VCPP55072 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VCPP55072 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.19■□□□□ 0.18
VCPP55072 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms