Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.27□□□□□ -0.13
SOX3P41225 AC093813.1-201ENST00000605066 256 ntBASIC14.27□□□□□ -0.13
SOX3P41225 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.27□□□□□ -0.13
SOX3P41225 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SOX3P41225 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SOX3P41225 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.27□□□□□ -0.13
SOX3P41225 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SOX3P41225 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.26□□□□□ -0.13
SOX3P41225 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.26□□□□□ -0.13
SOX3P41225 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.26□□□□□ -0.13
SOX3P41225 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
SOX3P41225 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
SOX3P41225 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 AC023024.2-201ENST00000623561 1993 ntBASIC14.26□□□□□ -0.13
SOX3P41225 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 OR8S1-201ENST00000310194 1080 ntBASIC14.26□□□□□ -0.13
SOX3P41225 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.26□□□□□ -0.13
SOX3P41225 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.26□□□□□ -0.13
SOX3P41225 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.26□□□□□ -0.13
SOX3P41225 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
SOX3P41225 GAPDHP40-201ENST00000505218 1006 ntBASIC14.26□□□□□ -0.13
SOX3P41225 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.26□□□□□ -0.13
SOX3P41225 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SOX3P41225 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SOX3P41225 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.26□□□□□ -0.13
SOX3P41225 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.26□□□□□ -0.13
SOX3P41225 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.26□□□□□ -0.13
SOX3P41225 AC005252.2-201ENST00000624630 1141 ntBASIC14.26□□□□□ -0.13
SOX3P41225 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.26□□□□□ -0.13
SOX3P41225 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.26□□□□□ -0.13
SOX3P41225 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SOX3P41225 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.26□□□□□ -0.13
SOX3P41225 AC041040.2-201ENST00000622926 2899 ntBASIC14.26□□□□□ -0.13
SOX3P41225 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.26□□□□□ -0.13
SOX3P41225 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 OR2I1P-209ENST00000641730 5365 ntBASIC14.26□□□□□ -0.13
SOX3P41225 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
SOX3P41225 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
SOX3P41225 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
SOX3P41225 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.25□□□□□ -0.13
SOX3P41225 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 AC148477.4-201ENST00000613430 1793 ntBASIC14.25□□□□□ -0.13
SOX3P41225 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
SOX3P41225 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.25□□□□□ -0.13
SOX3P41225 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
SOX3P41225 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 760.8 ms