Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC13.18□□□□□ -0.3
COL8A1P27658 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.18□□□□□ -0.3
COL8A1P27658 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.18□□□□□ -0.3
COL8A1P27658 AL391005.1-201ENST00000623953 2435 ntBASIC13.18□□□□□ -0.3
COL8A1P27658 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL8A1P27658 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
COL8A1P27658 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.17□□□□□ -0.3
COL8A1P27658 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
COL8A1P27658 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC13.17□□□□□ -0.3
COL8A1P27658 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC13.17□□□□□ -0.3
COL8A1P27658 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC13.17□□□□□ -0.3
COL8A1P27658 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC13.17□□□□□ -0.3
COL8A1P27658 PFN2-206ENST00000461930 606 ntTSL 4 BASIC13.17□□□□□ -0.3
COL8A1P27658 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC13.17□□□□□ -0.3
COL8A1P27658 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.17□□□□□ -0.3
COL8A1P27658 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC13.17□□□□□ -0.3
COL8A1P27658 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC13.17□□□□□ -0.3
COL8A1P27658 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC13.17□□□□□ -0.3
COL8A1P27658 FO393412.1-201ENST00000619841 382 ntBASIC13.17□□□□□ -0.3
COL8A1P27658 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.17□□□□□ -0.3
COL8A1P27658 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.17□□□□□ -0.3
COL8A1P27658 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.17□□□□□ -0.3
COL8A1P27658 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
COL8A1P27658 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.17□□□□□ -0.3
COL8A1P27658 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
COL8A1P27658 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL8A1P27658 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.16□□□□□ -0.3
COL8A1P27658 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
COL8A1P27658 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC13.16□□□□□ -0.3
COL8A1P27658 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC13.16□□□□□ -0.3
COL8A1P27658 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.16□□□□□ -0.3
COL8A1P27658 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
COL8A1P27658 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
COL8A1P27658 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC13.16□□□□□ -0.3
COL8A1P27658 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
COL8A1P27658 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC13.16□□□□□ -0.3
COL8A1P27658 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC13.16□□□□□ -0.3
COL8A1P27658 AC026410.1-201ENST00000507366 1101 ntBASIC13.16□□□□□ -0.3
COL8A1P27658 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.16□□□□□ -0.3
COL8A1P27658 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.16□□□□□ -0.3
COL8A1P27658 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 AL109837.1-201ENST00000603272 613 ntBASIC13.16□□□□□ -0.3
COL8A1P27658 AC010326.4-201ENST00000604665 891 ntBASIC13.16□□□□□ -0.3
COL8A1P27658 MIR6858-201ENST00000620733 67 ntBASIC13.16□□□□□ -0.3
COL8A1P27658 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.16□□□□□ -0.3
COL8A1P27658 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
COL8A1P27658 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL8A1P27658 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms