Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 AC027601.5-201ENST00000624065 2482 ntBASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 POLD2P1-201ENST00000511220 997 ntBASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CHMP1AQ9HD42 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 AC004832.2-201ENST00000426397 482 ntBASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 FAM8A3P-201ENST00000427218 844 ntBASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 ALG1L5P-201ENST00000482043 771 ntBASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 CCND1-203ENST00000536559 553 ntTSL 3 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CHMP1AQ9HD42 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms