Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 CYMP-203ENST00000474680 1263 ntBASIC13.27□□□□□ -0.29
NKX3-1Q99801 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 RFPL4AP1-201ENST00000530883 850 ntBASIC13.27□□□□□ -0.29
NKX3-1Q99801 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 AC015910.1-201ENST00000579400 975 ntBASIC13.27□□□□□ -0.29
NKX3-1Q99801 LSM12-202ENST00000585388 942 ntTSL 3 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 AL589739.1-201ENST00000607720 493 ntBASIC13.27□□□□□ -0.29
NKX3-1Q99801 AC007967.4-201ENST00000614700 386 ntBASIC13.27□□□□□ -0.29
NKX3-1Q99801 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 ORC5-208ENST00000626700 344 ntTSL 3 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 AL080243.2-201ENST00000418783 582 ntBASIC13.26□□□□□ -0.29
NKX3-1Q99801 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 AC109322.1-201ENST00000524499 1264 ntBASIC13.26□□□□□ -0.29
NKX3-1Q99801 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 AL157414.3-201ENST00000624276 1954 ntBASIC13.26□□□□□ -0.29
NKX3-1Q99801 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
NKX3-1Q99801 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
NKX3-1Q99801 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 GRK6P1-201ENST00000400595 1711 ntBASIC13.25□□□□□ -0.29
NKX3-1Q99801 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.25□□□□□ -0.29
NKX3-1Q99801 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
NKX3-1Q99801 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms