Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 AL512638.1-201ENST00000457493 794 ntBASIC13.62□□□□□ -0.23
PTP4A1Q93096 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
PTP4A1Q93096 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PTP4A1Q93096 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 AL356585.2-201ENST00000625078 2396 ntBASIC13.61□□□□□ -0.23
PTP4A1Q93096 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 BASP1P1-201ENST00000430708 665 ntBASIC13.61□□□□□ -0.23
PTP4A1Q93096 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 TPT1P11-201ENST00000458482 498 ntBASIC13.61□□□□□ -0.23
PTP4A1Q93096 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 AL354702.1-201ENST00000442006 1960 ntBASIC13.61□□□□□ -0.23
PTP4A1Q93096 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
PTP4A1Q93096 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PTP4A1Q93096 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.6□□□□□ -0.23
PTP4A1Q93096 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
PTP4A1Q93096 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 AC018665.1-201ENST00000622927 1362 ntBASIC13.6□□□□□ -0.23
PTP4A1Q93096 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.6□□□□□ -0.23
PTP4A1Q93096 AC023090.2-201ENST00000625182 2110 ntBASIC13.6□□□□□ -0.23
PTP4A1Q93096 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
PTP4A1Q93096 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
PTP4A1Q93096 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
PTP4A1Q93096 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.6□□□□□ -0.23
PTP4A1Q93096 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
PTP4A1Q93096 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
PTP4A1Q93096 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.6□□□□□ -0.23
PTP4A1Q93096 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.6□□□□□ -0.23
PTP4A1Q93096 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms