Protein–RNA interactions for Protein: P61247

RPS3A, 40S ribosomal protein S3a, humanhuman

Known RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3AP61247 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.28□□□□□ -0.12
RPS3AP61247 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.28□□□□□ -0.12
RPS3AP61247 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPS3AP61247 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.28□□□□□ -0.12
RPS3AP61247 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.28□□□□□ -0.12
RPS3AP61247 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPS3AP61247 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.28□□□□□ -0.12
RPS3AP61247 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPS3AP61247 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.28□□□□□ -0.12
RPS3AP61247 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
RPS3AP61247 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.28□□□□□ -0.12
RPS3AP61247 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.28□□□□□ -0.12
RPS3AP61247 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.28□□□□□ -0.12
RPS3AP61247 AC025048.3-201ENST00000590609 569 ntBASIC14.28□□□□□ -0.12
RPS3AP61247 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.28□□□□□ -0.12
RPS3AP61247 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.28□□□□□ -0.12
RPS3AP61247 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.28□□□□□ -0.12
RPS3AP61247 AC005702.4-201ENST00000618393 416 ntBASIC14.28□□□□□ -0.12
RPS3AP61247 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPS3AP61247 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPS3AP61247 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPS3AP61247 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPS3AP61247 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPS3AP61247 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPS3AP61247 Z82170.1-201ENST00000625081 3192 ntBASIC14.28□□□□□ -0.12
RPS3AP61247 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
RPS3AP61247 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPS3AP61247 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPS3AP61247 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.27□□□□□ -0.12
RPS3AP61247 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPS3AP61247 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.27□□□□□ -0.12
RPS3AP61247 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPS3AP61247 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
RPS3AP61247 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.27□□□□□ -0.12
RPS3AP61247 INTS4P1-203ENST00000641008 3683 ntBASIC14.27□□□□□ -0.12
RPS3AP61247 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.27□□□□□ -0.12
RPS3AP61247 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RPS3AP61247 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
RPS3AP61247 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RPS3AP61247 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPS3AP61247 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
RPS3AP61247 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
RPS3AP61247 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.27□□□□□ -0.12
RPS3AP61247 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPS3AP61247 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.27□□□□□ -0.12
RPS3AP61247 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.27□□□□□ -0.12
RPS3AP61247 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPS3AP61247 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
RPS3AP61247 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RPS3AP61247 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.27□□□□□ -0.12
RPS3AP61247 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.27□□□□□ -0.13
RPS3AP61247 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.27□□□□□ -0.13
RPS3AP61247 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.27□□□□□ -0.13
RPS3AP61247 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.27□□□□□ -0.13
RPS3AP61247 HIST3H2BA-201ENST00000436555 524 ntBASIC14.27□□□□□ -0.13
RPS3AP61247 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
RPS3AP61247 SERBP1P5-201ENST00000510079 1181 ntBASIC14.27□□□□□ -0.13
RPS3AP61247 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.27□□□□□ -0.13
RPS3AP61247 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.27□□□□□ -0.13
RPS3AP61247 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.27□□□□□ -0.13
RPS3AP61247 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
RPS3AP61247 AC138761.1-201ENST00000584393 385 ntBASIC14.27□□□□□ -0.13
RPS3AP61247 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 AC027307.3-201ENST00000594262 1100 ntBASIC14.27□□□□□ -0.13
RPS3AP61247 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.27□□□□□ -0.13
RPS3AP61247 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.27□□□□□ -0.13
RPS3AP61247 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 PPT1-213ENST00000641319 2388 ntBASIC14.27□□□□□ -0.13
RPS3AP61247 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
RPS3AP61247 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.27□□□□□ -0.13
RPS3AP61247 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
RPS3AP61247 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.27□□□□□ -0.13
RPS3AP61247 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPS3AP61247 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.26□□□□□ -0.13
RPS3AP61247 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
RPS3AP61247 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPS3AP61247 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPS3AP61247 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPS3AP61247 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.26□□□□□ -0.13
RPS3AP61247 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC14.26□□□□□ -0.13
RPS3AP61247 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPS3AP61247 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPS3AP61247 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.26□□□□□ -0.13
RPS3AP61247 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPS3AP61247 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RPS3AP61247 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
RPS3AP61247 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPS3AP61247 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPS3AP61247 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms