Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
BRF2Q9HAW0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRF2Q9HAW0 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
BRF2Q9HAW0 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRF2Q9HAW0 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.01■■□□□ 1.11
BRF2Q9HAW0 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.01■■□□□ 1.11
BRF2Q9HAW0 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.01■■□□□ 1.11
BRF2Q9HAW0 MIR4508-201ENST00000584178 70 ntBASIC22.01■■□□□ 1.11
BRF2Q9HAW0 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.01■■□□□ 1.11
BRF2Q9HAW0 THA1P-201ENST00000590384 1145 ntBASIC22.01■■□□□ 1.11
BRF2Q9HAW0 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
BRF2Q9HAW0 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
BRF2Q9HAW0 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
BRF2Q9HAW0 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BRF2Q9HAW0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22■■□□□ 1.11
BRF2Q9HAW0 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22■■□□□ 1.11
BRF2Q9HAW0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22■■□□□ 1.11
BRF2Q9HAW0 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22■■□□□ 1.11
BRF2Q9HAW0 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22■■□□□ 1.11
BRF2Q9HAW0 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC22■■□□□ 1.11
BRF2Q9HAW0 AC131274.2-201ENST00000580697 1507 ntBASIC22■■□□□ 1.11
BRF2Q9HAW0 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
BRF2Q9HAW0 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 AL033527.3-201ENST00000566366 1196 ntBASIC21.99■■□□□ 1.11
BRF2Q9HAW0 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.99■■□□□ 1.11
BRF2Q9HAW0 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
BRF2Q9HAW0 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.98■■□□□ 1.11
BRF2Q9HAW0 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRF2Q9HAW0 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
BRF2Q9HAW0 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.98■■□□□ 1.11
BRF2Q9HAW0 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
BRF2Q9HAW0 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.97■■□□□ 1.11
BRF2Q9HAW0 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.97■■□□□ 1.11
BRF2Q9HAW0 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BRF2Q9HAW0 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BRF2Q9HAW0 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BRF2Q9HAW0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BRF2Q9HAW0 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.97■■□□□ 1.11
BRF2Q9HAW0 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.97■■□□□ 1.11
BRF2Q9HAW0 MIR4281-201ENST00000580852 62 ntBASIC21.97■■□□□ 1.11
BRF2Q9HAW0 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BRF2Q9HAW0 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BRF2Q9HAW0 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.96■■□□□ 1.11
BRF2Q9HAW0 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
BRF2Q9HAW0 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.95■■□□□ 1.1
BRF2Q9HAW0 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.95■■□□□ 1.1
BRF2Q9HAW0 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
BRF2Q9HAW0 AF131216.4-201ENST00000638924 1588 ntBASIC21.95■■□□□ 1.1
BRF2Q9HAW0 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
BRF2Q9HAW0 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRF2Q9HAW0 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRF2Q9HAW0 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRF2Q9HAW0 DUSP8P5-201ENST00000422884 1815 ntBASIC21.93■■□□□ 1.1
BRF2Q9HAW0 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
BRF2Q9HAW0 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRF2Q9HAW0 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRF2Q9HAW0 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRF2Q9HAW0 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRF2Q9HAW0 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
BRF2Q9HAW0 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
BRF2Q9HAW0 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BRF2Q9HAW0 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.92■■□□□ 1.1
BRF2Q9HAW0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
BRF2Q9HAW0 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BRF2Q9HAW0 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
BRF2Q9HAW0 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms