Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIME1Q9H400 AL031432.3-201ENST00000607698 485 ntBASIC20.18■□□□□ 0.82
LIME1Q9H400 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.18■□□□□ 0.82
LIME1Q9H400 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.18■□□□□ 0.82
LIME1Q9H400 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIME1Q9H400 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
LIME1Q9H400 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.18■□□□□ 0.82
LIME1Q9H400 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIME1Q9H400 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
LIME1Q9H400 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
LIME1Q9H400 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIME1Q9H400 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LIME1Q9H400 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIME1Q9H400 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIME1Q9H400 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.17■□□□□ 0.82
LIME1Q9H400 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIME1Q9H400 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.17■□□□□ 0.82
LIME1Q9H400 SUDS3P1-201ENST00000505831 966 ntBASIC20.17■□□□□ 0.82
LIME1Q9H400 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.17■□□□□ 0.82
LIME1Q9H400 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
LIME1Q9H400 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIME1Q9H400 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIME1Q9H400 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIME1Q9H400 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIME1Q9H400 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIME1Q9H400 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LIME1Q9H400 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIME1Q9H400 AL136162.1-201ENST00000607711 1078 ntBASIC20.16■□□□□ 0.82
LIME1Q9H400 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.16■□□□□ 0.82
LIME1Q9H400 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
LIME1Q9H400 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIME1Q9H400 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIME1Q9H400 AL139125.2-201ENST00000623134 1869 ntBASIC20.16■□□□□ 0.82
LIME1Q9H400 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
LIME1Q9H400 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIME1Q9H400 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIME1Q9H400 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
LIME1Q9H400 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.15■□□□□ 0.82
LIME1Q9H400 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.15■□□□□ 0.82
LIME1Q9H400 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIME1Q9H400 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.15■□□□□ 0.82
LIME1Q9H400 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIME1Q9H400 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
LIME1Q9H400 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIME1Q9H400 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
LIME1Q9H400 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIME1Q9H400 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIME1Q9H400 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIME1Q9H400 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.14■□□□□ 0.81
LIME1Q9H400 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
LIME1Q9H400 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIME1Q9H400 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.14■□□□□ 0.81
LIME1Q9H400 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.14■□□□□ 0.81
LIME1Q9H400 AC104564.3-201ENST00000582367 638 ntBASIC20.14■□□□□ 0.81
LIME1Q9H400 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.14■□□□□ 0.81
LIME1Q9H400 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIME1Q9H400 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.13■□□□□ 0.81
LIME1Q9H400 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIME1Q9H400 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.13■□□□□ 0.81
LIME1Q9H400 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LIME1Q9H400 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LIME1Q9H400 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
LIME1Q9H400 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIME1Q9H400 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIME1Q9H400 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIME1Q9H400 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LIME1Q9H400 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.12■□□□□ 0.81
LIME1Q9H400 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.12■□□□□ 0.81
LIME1Q9H400 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIME1Q9H400 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIME1Q9H400 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.12■□□□□ 0.81
LIME1Q9H400 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIME1Q9H400 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIME1Q9H400 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIME1Q9H400 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.11■□□□□ 0.81
LIME1Q9H400 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.11■□□□□ 0.81
LIME1Q9H400 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIME1Q9H400 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIME1Q9H400 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LIME1Q9H400 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIME1Q9H400 MIR5787-201ENST00000611784 55 ntBASIC20.11■□□□□ 0.81
LIME1Q9H400 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.11■□□□□ 0.81
LIME1Q9H400 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.11■□□□□ 0.81
LIME1Q9H400 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIME1Q9H400 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIME1Q9H400 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
LIME1Q9H400 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIME1Q9H400 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIME1Q9H400 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIME1Q9H400 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
LIME1Q9H400 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
LIME1Q9H400 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.1■□□□□ 0.81
LIME1Q9H400 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.1■□□□□ 0.81
LIME1Q9H400 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.1■□□□□ 0.81
LIME1Q9H400 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIME1Q9H400 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.1■□□□□ 0.81
LIME1Q9H400 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
LIME1Q9H400 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.1■□□□□ 0.81
LIME1Q9H400 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIME1Q9H400 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms