Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
MSX1P28360 AC021242.3-201ENST00000607598 1377 ntBASIC21.05■□□□□ 0.96
MSX1P28360 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSX1P28360 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSX1P28360 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSX1P28360 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSX1P28360 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSX1P28360 AL022069.1-201ENST00000568025 1636 ntBASIC21.04■□□□□ 0.96
MSX1P28360 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSX1P28360 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.04■□□□□ 0.96
MSX1P28360 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.04■□□□□ 0.96
MSX1P28360 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSX1P28360 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.04■□□□□ 0.96
MSX1P28360 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSX1P28360 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSX1P28360 TSPY9P-201ENST00000440215 945 ntBASIC21.03■□□□□ 0.96
MSX1P28360 TSPY11P-201ENST00000442607 1045 ntBASIC21.03■□□□□ 0.96
MSX1P28360 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.03■□□□□ 0.96
MSX1P28360 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.03■□□□□ 0.96
MSX1P28360 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSX1P28360 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.03■□□□□ 0.96
MSX1P28360 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSX1P28360 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
MSX1P28360 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSX1P28360 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
MSX1P28360 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.02■□□□□ 0.96
MSX1P28360 LINC00543-201ENST00000567234 1845 ntBASIC21.02■□□□□ 0.96
MSX1P28360 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSX1P28360 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSX1P28360 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
MSX1P28360 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.02■□□□□ 0.96
MSX1P28360 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.02■□□□□ 0.96
MSX1P28360 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.02■□□□□ 0.96
MSX1P28360 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
MSX1P28360 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.02■□□□□ 0.96
MSX1P28360 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
MSX1P28360 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSX1P28360 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.01■□□□□ 0.95
MSX1P28360 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSX1P28360 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.01■□□□□ 0.95
MSX1P28360 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
MSX1P28360 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.01■□□□□ 0.95
MSX1P28360 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSX1P28360 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSX1P28360 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MSX1P28360 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSX1P28360 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSX1P28360 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSX1P28360 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21■□□□□ 0.95
MSX1P28360 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
MSX1P28360 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSX1P28360 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21■□□□□ 0.95
MSX1P28360 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21■□□□□ 0.95
MSX1P28360 LINC01124-201ENST00000409786 2117 ntBASIC20.99■□□□□ 0.95
MSX1P28360 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MSX1P28360 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
MSX1P28360 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSX1P28360 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSX1P28360 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MSX1P28360 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.99■□□□□ 0.95
MSX1P28360 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
MSX1P28360 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.99■□□□□ 0.95
MSX1P28360 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.99■□□□□ 0.95
MSX1P28360 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSX1P28360 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSX1P28360 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
MSX1P28360 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSX1P28360 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.98■□□□□ 0.95
MSX1P28360 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSX1P28360 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
MSX1P28360 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSX1P28360 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.98■□□□□ 0.95
MSX1P28360 AC131274.2-201ENST00000580697 1507 ntBASIC20.98■□□□□ 0.95
MSX1P28360 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSX1P28360 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSX1P28360 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.97■□□□□ 0.95
MSX1P28360 MIR638-201ENST00000385237 100 ntBASIC20.97■□□□□ 0.95
MSX1P28360 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.97■□□□□ 0.95
MSX1P28360 AC004448.1-201ENST00000458332 883 ntBASIC20.97■□□□□ 0.95
MSX1P28360 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.97■□□□□ 0.95
MSX1P28360 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.97■□□□□ 0.95
MSX1P28360 AC092028.1-203ENST00000608262 953 ntBASIC20.97■□□□□ 0.95
MSX1P28360 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSX1P28360 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
MSX1P28360 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.96■□□□□ 0.95
MSX1P28360 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSX1P28360 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
MSX1P28360 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSX1P28360 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.95■□□□□ 0.94
MSX1P28360 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSX1P28360 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.95■□□□□ 0.94
MSX1P28360 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
MSX1P28360 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
MSX1P28360 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.94■□□□□ 0.94
MSX1P28360 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSX1P28360 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSX1P28360 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.94■□□□□ 0.94
MSX1P28360 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSX1P28360 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.94■□□□□ 0.94
MSX1P28360 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms