Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CACNA1FO60840 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC29.36■■■□□ 2.29
CACNA1FO60840 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CACNA1FO60840 MIR6722-201ENST00000617286 78 ntBASIC29.36■■■□□ 2.29
CACNA1FO60840 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
CACNA1FO60840 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC29.36■■■□□ 2.29
CACNA1FO60840 AL161729.1-201ENST00000604104 1402 ntBASIC29.35■■■□□ 2.29
CACNA1FO60840 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
CACNA1FO60840 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC29.35■■■□□ 2.29
CACNA1FO60840 AL512631.2-201ENST00000604634 923 ntBASIC29.35■■■□□ 2.29
CACNA1FO60840 AL117332.1-201ENST00000622628 974 ntBASIC29.35■■■□□ 2.29
CACNA1FO60840 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
CACNA1FO60840 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC29.35■■■□□ 2.29
CACNA1FO60840 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CACNA1FO60840 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC29.35■■■□□ 2.29
CACNA1FO60840 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
CACNA1FO60840 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC29.35■■■□□ 2.29
CACNA1FO60840 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
CACNA1FO60840 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC29.34■■■□□ 2.29
CACNA1FO60840 CD72-202ENST00000378430 585 ntTSL 3 BASIC29.34■■■□□ 2.29
CACNA1FO60840 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC29.34■■■□□ 2.29
CACNA1FO60840 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC29.34■■■□□ 2.29
CACNA1FO60840 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
CACNA1FO60840 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
CACNA1FO60840 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
CACNA1FO60840 EI24-204ENST00000527235 1625 ntTSL 5 BASIC29.33■■■□□ 2.29
CACNA1FO60840 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CACNA1FO60840 TSPY9P-201ENST00000440215 945 ntBASIC29.32■■■□□ 2.28
CACNA1FO60840 TSPY11P-201ENST00000442607 1045 ntBASIC29.32■■■□□ 2.28
CACNA1FO60840 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC29.32■■■□□ 2.28
CACNA1FO60840 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
CACNA1FO60840 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CACNA1FO60840 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CACNA1FO60840 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC29.32■■■□□ 2.28
CACNA1FO60840 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC29.31■■■□□ 2.28
CACNA1FO60840 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC29.31■■■□□ 2.28
CACNA1FO60840 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC29.3■■■□□ 2.28
CACNA1FO60840 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
CACNA1FO60840 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
CACNA1FO60840 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
CACNA1FO60840 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
CACNA1FO60840 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
CACNA1FO60840 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CACNA1FO60840 MIR3621-201ENST00000580529 85 ntBASIC29.29■■■□□ 2.28
CACNA1FO60840 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CACNA1FO60840 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CACNA1FO60840 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CACNA1FO60840 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
CACNA1FO60840 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC29.28■■■□□ 2.28
CACNA1FO60840 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CACNA1FO60840 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
CACNA1FO60840 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC29.28■■■□□ 2.28
CACNA1FO60840 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
CACNA1FO60840 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC29.28■■■□□ 2.28
CACNA1FO60840 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CACNA1FO60840 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CACNA1FO60840 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CACNA1FO60840 PREB-202ENST00000406567 1910 ntTSL 5 BASIC29.27■■■□□ 2.28
CACNA1FO60840 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC29.27■■■□□ 2.28
CACNA1FO60840 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC29.27■■■□□ 2.28
CACNA1FO60840 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CACNA1FO60840 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
CACNA1FO60840 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CACNA1FO60840 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.28
CACNA1FO60840 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
CACNA1FO60840 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
CACNA1FO60840 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
CACNA1FO60840 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC29.26■■■□□ 2.28
CACNA1FO60840 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
CACNA1FO60840 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
CACNA1FO60840 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CACNA1FO60840 SRR-208ENST00000576848 588 ntTSL 4 BASIC29.26■■■□□ 2.27
CACNA1FO60840 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC29.26■■■□□ 2.27
CACNA1FO60840 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC29.26■■■□□ 2.27
CACNA1FO60840 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
CACNA1FO60840 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
CACNA1FO60840 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC29.25■■■□□ 2.27
CACNA1FO60840 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC29.25■■■□□ 2.27
CACNA1FO60840 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CACNA1FO60840 AC005703.6-201ENST00000623265 1329 ntBASIC29.25■■■□□ 2.27
CACNA1FO60840 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CACNA1FO60840 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CACNA1FO60840 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC29.24■■■□□ 2.27
CACNA1FO60840 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC29.24■■■□□ 2.27
CACNA1FO60840 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CACNA1FO60840 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CACNA1FO60840 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC29.23■■■□□ 2.27
CACNA1FO60840 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC29.23■■■□□ 2.27
CACNA1FO60840 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC29.23■■■□□ 2.27
CACNA1FO60840 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CACNA1FO60840 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
CACNA1FO60840 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CACNA1FO60840 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC29.22■■■□□ 2.27
CACNA1FO60840 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
CACNA1FO60840 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC29.22■■■□□ 2.27
CACNA1FO60840 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC29.22■■■□□ 2.27
CACNA1FO60840 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC29.22■■■□□ 2.27
CACNA1FO60840 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
CACNA1FO60840 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CACNA1FO60840 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms