Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 AL390755.1-201ENST00000623716 2027 ntBASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 GNAQP1-201ENST00000444815 1067 ntBASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 AC090953.1-201ENST00000604305 1092 ntBASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 AC004233.3-201ENST00000607794 1269 ntBASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 AC004790.1-201ENST00000612686 536 ntBASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 CICP24-201ENST00000605464 2705 ntBASIC15.16■□□□□ 0.02
VPS9D1Q9Y2B5 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 C1QBPP1-201ENST00000400117 770 ntBASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 SOCS2P1-201ENST00000417727 557 ntBASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 AL603764.1-201ENST00000636452 321 ntBASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 AC138969.2-201ENST00000532739 9932 ntBASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.15■□□□□ 0.02
VPS9D1Q9Y2B5 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 RTN1-203ENST00000395090 1609 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.14■□□□□ 0.01
VPS9D1Q9Y2B5 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms