RNA–Protein interactions for RNA: ENST00000395090.5

RTN1-203, Transcript of reticulon 1, humanhuman

TSL 2 BASIC

Gene RTN1, Length 1,609 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-203ENST00000395090 AEBP2Q6ZN18 517 aaPredicted RBP34.16■■■■□ 3.06
RTN1-203ENST00000395090 CHIC1Q5VXU3 224 aa33.9■■■■□ 3.02
RTN1-203ENST00000395090 PHF23Q9BUL5 403 aaPredicted RBP29.85■■■□□ 2.37
RTN1-203ENST00000395090 SENP3Q9H4L4 574 aaPredicted RBP28.94■■■□□ 2.22
RTN1-203ENST00000395090 PLPPR3Q6T4P5 718 aa27.78■■■□□ 2.04
RTN1-203ENST00000395090 FOXD1Q16676 465 aa26.77■■□□□ 1.88
RTN1-203ENST00000395090 NISCHQ9Y2I1 1504 aa26.21■■□□□ 1.79
RTN1-203ENST00000395090 ADRA2BP18089 450 aa26.19■■□□□ 1.78
RTN1-203ENST00000395090 PPP6R1Q9UPN7 881 aa26.17■■□□□ 1.78
RTN1-203ENST00000395090 PIAS4Q8N2W9 510 aaPredicted RBP25.4■■□□□ 1.66
RTN1-203ENST00000395090 KCNA4P22459 653 aa24.56■■□□□ 1.52
RTN1-203ENST00000395090 PPP4R3CPQ6ZMV5 832 aa24.53■■□□□ 1.52
RTN1-203ENST00000395090 MSH5O43196 834 aa24.5■■□□□ 1.51
RTN1-203ENST00000395090 NCBP3Q53F19 620 aaKnown RBP24.07■■□□□ 1.44
RTN1-203ENST00000395090 SCAF1Q9H7N4 1312 aaKnown RBP23.99■■□□□ 1.43
RTN1-203ENST00000395090 CNKSR2Q8WXI2 1034 aa23.74■■□□□ 1.39
RTN1-203ENST00000395090 NPM3O75607 178 aaKnown RBP23.69■■□□□ 1.38
RTN1-203ENST00000395090 MAPK8IP2Q13387 824 aaPredicted RBP23.59■■□□□ 1.37
RTN1-203ENST00000395090 SLC4A1APQ9BWU0 796 aaKnown RBP23.5■■□□□ 1.35
RTN1-203ENST00000395090 EHMT2Q96KQ7 1210 aa23.44■■□□□ 1.34
RTN1-203ENST00000395090 DMRT2Q9Y5R5 561 aa23.17■■□□□ 1.3
RTN1-203ENST00000395090 RNF216Q9NWF9 866 aaPredicted RBP23.15■■□□□ 1.3
RTN1-203ENST00000395090 DNAJC5BQ9UF47 199 aa22.93■■□□□ 1.26
RTN1-203ENST00000395090 CCDC180Q9P1Z9 1646 aa22.92■■□□□ 1.26
RTN1-203ENST00000395090 CSRNP3Q8WYN3 585 aa22.91■■□□□ 1.26
RTN1-203ENST00000395090 HOXD11P31277 338 aaPredicted RBP22.9■■□□□ 1.26
RTN1-203ENST00000395090 ZBTB22O15209 634 aa22.6■■□□□ 1.21
RTN1-203ENST00000395090 FOXD4L1Q9NU39 408 aa22.46■■□□□ 1.19
RTN1-203ENST00000395090 SLC4A2P04920 1241 aa22.23■■□□□ 1.15
RTN1-203ENST00000395090 DCAF8L1A6NGE4 600 aa22.16■■□□□ 1.14
RTN1-203ENST00000395090 ZCCHC6Q5VYS8 1495 aaKnown RBP21.96■■□□□ 1.11
RTN1-203ENST00000395090 MYCNP04198 464 aaPredicted RBP21.9■■□□□ 1.1
RTN1-203ENST00000395090 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.84■■□□□ 1.09
RTN1-203ENST00000395090 ABCC9O60706 1549 aa21.82■■□□□ 1.08
RTN1-203ENST00000395090 DCAF1Q9Y4B6 1507 aa21.73■■□□□ 1.07
RTN1-203ENST00000395090 DCAF8L2P0C7V8 631 aa21.65■■□□□ 1.06
RTN1-203ENST00000395090 ATXN8OSP0DMR3 200 aa21.64■■□□□ 1.05
RTN1-203ENST00000395090 MYO15BQ96JP2 1530 aa21.58■■□□□ 1.04
RTN1-203ENST00000395090 U3KPZ7 1027 aaPredicted RBP21.53■■□□□ 1.04
RTN1-203ENST00000395090 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.47■■□□□ 1.03
RTN1-203ENST00000395090 HNRNPUL2Q1KMD3 747 aaKnown RBP21.47■■□□□ 1.03
RTN1-203ENST00000395090 NACADO15069 1562 aa21.44■■□□□ 1.02
RTN1-203ENST00000395090 SAMD1Q6SPF0 538 aaPredicted RBP21.41■■□□□ 1.02
RTN1-203ENST00000395090 POTEDQ86YR6 584 aa21.36■■□□□ 1.01
RTN1-203ENST00000395090 RB1CC1Q8TDY2 1594 aa21.27■□□□□ 0.99
RTN1-203ENST00000395090 ATF5Q9Y2D1 282 aaPredicted RBP21.24■□□□□ 0.99
RTN1-203ENST00000395090 APLP2Q06481 763 aa21.13■□□□□ 0.97
RTN1-203ENST00000395090 SHROOM4Q9ULL8 1493 aa21.12■□□□□ 0.97
RTN1-203ENST00000395090 RNF39Q9H2S5 420 aa21.04■□□□□ 0.96
RTN1-203ENST00000395090 SCRIBQ14160 1630 aa20.97■□□□□ 0.95
RTN1-203ENST00000395090 ZNF219Q9P2Y4 722 aaPredicted RBP20.87■□□□□ 0.93
RTN1-203ENST00000395090 C1QBPQ07021 282 aaKnown RBP20.82■□□□□ 0.92
RTN1-203ENST00000395090 SPINK5Q9NQ38 1064 aaPredicted RBP20.78■□□□□ 0.92
RTN1-203ENST00000395090 UNC13AQ9UPW8 1703 aa20.77■□□□□ 0.92
RTN1-203ENST00000395090 TRHP20396 242 aaPredicted RBP20.71■□□□□ 0.91
RTN1-203ENST00000395090 FKBP8Q14318 412 aa20.7■□□□□ 0.9
RTN1-203ENST00000395090 CAPN15O75808 1086 aa20.68■□□□□ 0.9
RTN1-203ENST00000395090 BICRAQ9NZM4 1560 aa20.64■□□□□ 0.9
RTN1-203ENST00000395090 PABPN1Q86U42 306 aaKnown RBP eCLIP20.56■□□□□ 0.88
RTN1-203ENST00000395090 POLA2Q14181 598 aa20.49■□□□□ 0.87
RTN1-203ENST00000395090 CECR2Q9BXF3 1484 aa20.36■□□□□ 0.85
RTN1-203ENST00000395090 FBLN2P98095 1184 aa20.35■□□□□ 0.85
RTN1-203ENST00000395090 MKRN4PQ13434 485 aaPredicted RBP20.35■□□□□ 0.85
RTN1-203ENST00000395090 ABCB7O75027 752 aa20.32■□□□□ 0.84
RTN1-203ENST00000395090 RSF1Q96T23 1441 aaPredicted RBP20.27■□□□□ 0.84
RTN1-203ENST00000395090 SUPT5HO00267 1087 aaKnown RBP20.26■□□□□ 0.83
RTN1-203ENST00000395090 BAZ1AQ9NRL2 1556 aaPredicted RBP20.24■□□□□ 0.83
RTN1-203ENST00000395090 MROH2BQ7Z745 1585 aa20.22■□□□□ 0.83
RTN1-203ENST00000395090 ZBTB12Q9Y330 459 aaPredicted RBP20.21■□□□□ 0.83
RTN1-203ENST00000395090 DSG3P32926 999 aa20.2■□□□□ 0.82
RTN1-203ENST00000395090 SPDYE4A6NLX3 237 aa20.17■□□□□ 0.82
RTN1-203ENST00000395090 SMARCA4P51532 1647 aa20.15■□□□□ 0.82
RTN1-203ENST00000395090 CACNB1Q02641 598 aaPredicted RBP20.12■□□□□ 0.81
RTN1-203ENST00000395090 EIF4G1Q04637 1599 aaKnown RBP20.01■□□□□ 0.79
RTN1-203ENST00000395090 WIZO95785 1651 aa20■□□□□ 0.79
RTN1-203ENST00000395090 PEG3Q9GZU2 1588 aa19.98■□□□□ 0.79
RTN1-203ENST00000395090 ATAD2BQ9ULI0 1458 aa19.92■□□□□ 0.78
RTN1-203ENST00000395090 PROM2Q8N271 834 aa19.9■□□□□ 0.78
RTN1-203ENST00000395090 SMARCA2P51531 1590 aa19.89■□□□□ 0.78
RTN1-203ENST00000395090 FBXO3Q9UK99 471 aa19.84■□□□□ 0.77
RTN1-203ENST00000395090 NCAPD3P42695 1498 aa19.83■□□□□ 0.77
RTN1-203ENST00000395090 TOP2AP11388 1531 aaKnown RBP19.82■□□□□ 0.76
RTN1-203ENST00000395090 AMER1Q5JTC6 1135 aaPredicted RBP19.8■□□□□ 0.76
RTN1-203ENST00000395090 OSCARQ8IYS5 282 aa19.77■□□□□ 0.76
RTN1-203ENST00000395090 CC2D2AQ9P2K1 1620 aa19.76■□□□□ 0.75
RTN1-203ENST00000395090 BAZ1BQ9UIG0 1483 aaKnown RBP19.75■□□□□ 0.75
RTN1-203ENST00000395090 RTN4Q9NQC3 1192 aaKnown RBP19.74■□□□□ 0.75
RTN1-203ENST00000395090 HMGXB3Q12766 1538 aa19.73■□□□□ 0.75
RTN1-203ENST00000395090 ZNF692Q9BU19 519 aaPredicted RBP19.71■□□□□ 0.75
RTN1-203ENST00000395090 SPDYE2BA6NHP3 402 aa19.7■□□□□ 0.74
RTN1-203ENST00000395090 SPDYE6P0CI01 402 aa19.7■□□□□ 0.74
RTN1-203ENST00000395090 SPDYE2Q495Y8 402 aa19.7■□□□□ 0.74
RTN1-203ENST00000395090 CCDC88BA6NC98 1476 aa19.64■□□□□ 0.73
RTN1-203ENST00000395090 SSUH2Q9Y2M2 353 aa19.59■□□□□ 0.73
RTN1-203ENST00000395090 VASPP50552 380 aaPredicted RBP19.54■□□□□ 0.72
RTN1-203ENST00000395090 STAG3Q9UJ98 1225 aa19.33■□□□□ 0.68
RTN1-203ENST00000395090 CFTRP13569 1480 aa19.31■□□□□ 0.68
RTN1-203ENST00000395090 IFNLR1Q8IU57 520 aaPredicted RBP19.3■□□□□ 0.68
RTN1-203ENST00000395090 CADPSQ9ULU8 1353 aa19.29■□□□□ 0.68
RTN1-203ENST00000395090 RBM42Q9BTD8 480 aaKnown RBP19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms