Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 KRT8P12-202ENST00000472924 1397 ntBASIC13.29□□□□□ -0.28
NKX3-1Q99801 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX3-1Q99801 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX3-1Q99801 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 FO393414.2-201ENST00000405153 598 ntBASIC13.28□□□□□ -0.28
NKX3-1Q99801 RAD18-204ENST00000418463 563 ntTSL 4 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 RAD18-205ENST00000421052 582 ntTSL 3 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 SLED1-202ENST00000512051 380 ntBASIC13.28□□□□□ -0.28
NKX3-1Q99801 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 AC025181.2-201ENST00000606994 802 ntBASIC13.28□□□□□ -0.28
NKX3-1Q99801 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
NKX3-1Q99801 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX3-1Q99801 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
NKX3-1Q99801 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
NKX3-1Q99801 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX3-1Q99801 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
NKX3-1Q99801 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
NKX3-1Q99801 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.28
NKX3-1Q99801 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX3-1Q99801 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX3-1Q99801 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
NKX3-1Q99801 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX3-1Q99801 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX3-1Q99801 AC018442.1-201ENST00000421439 2061 ntBASIC13.27□□□□□ -0.28
NKX3-1Q99801 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX3-1Q99801 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
NKX3-1Q99801 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX3-1Q99801 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 AL139400.1-201ENST00000366220 510 ntBASIC13.27□□□□□ -0.29
NKX3-1Q99801 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
NKX3-1Q99801 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
NKX3-1Q99801 FAM86GP-201ENST00000448322 971 ntBASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms