Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HPS3Q969F9 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HPS3Q969F9 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.74■□□□□ 0.27
HPS3Q969F9 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
HPS3Q969F9 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HPS3Q969F9 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.74■□□□□ 0.27
HPS3Q969F9 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.74■□□□□ 0.27
HPS3Q969F9 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.74■□□□□ 0.27
HPS3Q969F9 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 AL162726.2-201ENST00000438986 1017 ntBASIC16.74■□□□□ 0.27
HPS3Q969F9 AC114812.1-204ENST00000449669 728 ntBASIC16.74■□□□□ 0.27
HPS3Q969F9 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.74■□□□□ 0.27
HPS3Q969F9 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HPS3Q969F9 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.74■□□□□ 0.27
HPS3Q969F9 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
HPS3Q969F9 ENPP7P5-201ENST00000541031 1031 ntBASIC16.74■□□□□ 0.27
HPS3Q969F9 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.74■□□□□ 0.27
HPS3Q969F9 AP001063.1-201ENST00000568332 529 ntBASIC16.74■□□□□ 0.27
HPS3Q969F9 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.74■□□□□ 0.27
HPS3Q969F9 AP005019.2-201ENST00000615104 511 ntBASIC16.74■□□□□ 0.27
HPS3Q969F9 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.74■□□□□ 0.27
HPS3Q969F9 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.74■□□□□ 0.27
HPS3Q969F9 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.74■□□□□ 0.27
HPS3Q969F9 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
HPS3Q969F9 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HPS3Q969F9 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.74■□□□□ 0.27
HPS3Q969F9 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HPS3Q969F9 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.74■□□□□ 0.27
HPS3Q969F9 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HPS3Q969F9 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HPS3Q969F9 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.73■□□□□ 0.27
HPS3Q969F9 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HPS3Q969F9 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.73■□□□□ 0.27
HPS3Q969F9 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.73■□□□□ 0.27
HPS3Q969F9 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HPS3Q969F9 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.73■□□□□ 0.27
HPS3Q969F9 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.73■□□□□ 0.27
HPS3Q969F9 AC010319.3-201ENST00000597028 470 ntBASIC16.73■□□□□ 0.27
HPS3Q969F9 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.73■□□□□ 0.27
HPS3Q969F9 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 FAM45BP-202ENST00000592932 1624 ntBASIC16.73■□□□□ 0.27
HPS3Q969F9 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.73■□□□□ 0.27
HPS3Q969F9 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HPS3Q969F9 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS3Q969F9 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HPS3Q969F9 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HPS3Q969F9 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.72■□□□□ 0.27
HPS3Q969F9 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HPS3Q969F9 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
HPS3Q969F9 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HPS3Q969F9 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS3Q969F9 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS3Q969F9 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HPS3Q969F9 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HPS3Q969F9 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.72■□□□□ 0.27
HPS3Q969F9 RN7SL837P-201ENST00000463010 287 ntBASIC16.72■□□□□ 0.27
HPS3Q969F9 AC022616.1-201ENST00000518688 554 ntBASIC16.72■□□□□ 0.27
HPS3Q969F9 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.72■□□□□ 0.27
HPS3Q969F9 MIR5189-201ENST00000577370 114 ntBASIC16.72■□□□□ 0.27
HPS3Q969F9 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms