Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC10.72□□□□□ -0.69
CKS1BP61024 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 LITAF-203ENST00000413364 2292 ntTSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 AC013726.1-201ENST00000563747 2285 ntBASIC10.72□□□□□ -0.69
CKS1BP61024 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC10.72□□□□□ -0.69
CKS1BP61024 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 RALGAPB-201ENST00000262879 8663 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 RALGAPB-203ENST00000397042 8652 ntAPPRIS ALT1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC10.72□□□□□ -0.69
CKS1BP61024 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC10.72□□□□□ -0.69
CKS1BP61024 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC10.72□□□□□ -0.69
CKS1BP61024 PRSS29P-201ENST00000440800 595 ntBASIC10.72□□□□□ -0.69
CKS1BP61024 AF238378.1-201ENST00000526806 358 ntBASIC10.72□□□□□ -0.69
CKS1BP61024 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC10.72□□□□□ -0.69
CKS1BP61024 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC10.72□□□□□ -0.69
CKS1BP61024 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 NT5C-211ENST00000582170 653 ntTSL 3 BASIC10.72□□□□□ -0.69
CKS1BP61024 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 SRGAP3-202ENST00000383836 8656 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC10.72□□□□□ -0.69
CKS1BP61024 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 ARFGEF1-201ENST00000262215 7225 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 RNF111-201ENST00000348370 5913 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC10.72□□□□□ -0.69
CKS1BP61024 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
CKS1BP61024 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 SYNRG-229ENST00000621136 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC10.72□□□□□ -0.69
CKS1BP61024 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC10.71□□□□□ -0.69
CKS1BP61024 CTCFL-218ENST00000608440 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
CKS1BP61024 DOK4-210ENST00000566936 2851 ntTSL 3 BASIC10.71□□□□□ -0.69
CKS1BP61024 C10orf90-202ENST00000356858 2995 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
CKS1BP61024 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC10.71□□□□□ -0.69
CKS1BP61024 ZMPSTE24-201ENST00000372759 3108 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC10.71□□□□□ -0.69
CKS1BP61024 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
CKS1BP61024 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
CKS1BP61024 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC10.71□□□□□ -0.69
CKS1BP61024 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC10.71□□□□□ -0.69
CKS1BP61024 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC10.71□□□□□ -0.69
CKS1BP61024 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC10.71□□□□□ -0.69
CKS1BP61024 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
CKS1BP61024 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
CKS1BP61024 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
CKS1BP61024 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC10.71□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms