Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC17.73■□□□□ 0.43
BRCA1P38398 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.73■□□□□ 0.43
BRCA1P38398 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC17.73■□□□□ 0.43
BRCA1P38398 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC17.73■□□□□ 0.43
BRCA1P38398 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC17.73■□□□□ 0.43
BRCA1P38398 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC17.73■□□□□ 0.43
BRCA1P38398 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC17.73■□□□□ 0.43
BRCA1P38398 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC17.73■□□□□ 0.43
BRCA1P38398 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.73■□□□□ 0.43
BRCA1P38398 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.73■□□□□ 0.43
BRCA1P38398 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
BRCA1P38398 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC17.73■□□□□ 0.43
BRCA1P38398 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC17.73■□□□□ 0.43
BRCA1P38398 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC17.73■□□□□ 0.43
BRCA1P38398 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 AC092896.1-201ENST00000465850 380 ntBASIC17.73■□□□□ 0.43
BRCA1P38398 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
BRCA1P38398 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC17.73■□□□□ 0.43
BRCA1P38398 FBXO36P1-201ENST00000579006 471 ntBASIC17.73■□□□□ 0.43
BRCA1P38398 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
BRCA1P38398 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC17.73■□□□□ 0.43
BRCA1P38398 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.73■□□□□ 0.43
BRCA1P38398 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BRCA1P38398 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.72■□□□□ 0.43
BRCA1P38398 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC17.72■□□□□ 0.43
BRCA1P38398 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.72■□□□□ 0.43
BRCA1P38398 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.72■□□□□ 0.43
BRCA1P38398 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC17.72■□□□□ 0.43
BRCA1P38398 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC17.72■□□□□ 0.43
BRCA1P38398 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
BRCA1P38398 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
BRCA1P38398 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 AC022080.1-201ENST00000366255 781 ntBASIC17.72■□□□□ 0.43
BRCA1P38398 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC17.72■□□□□ 0.43
BRCA1P38398 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC17.72■□□□□ 0.43
BRCA1P38398 LINC00265-2P-201ENST00000413372 782 ntBASIC17.72■□□□□ 0.43
BRCA1P38398 AC010900.1-201ENST00000449849 1296 ntBASIC17.72■□□□□ 0.43
BRCA1P38398 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC17.72■□□□□ 0.43
BRCA1P38398 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC17.72■□□□□ 0.43
BRCA1P38398 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC17.72■□□□□ 0.43
BRCA1P38398 CTBP2P6-201ENST00000526402 1229 ntBASIC17.72■□□□□ 0.43
BRCA1P38398 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC17.72■□□□□ 0.43
BRCA1P38398 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.72■□□□□ 0.43
BRCA1P38398 SNORD3B-1-201ENST00000577988 758 ntBASIC17.72■□□□□ 0.43
BRCA1P38398 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC17.72■□□□□ 0.43
BRCA1P38398 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.72■□□□□ 0.43
BRCA1P38398 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.72■□□□□ 0.43
BRCA1P38398 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
BRCA1P38398 FZD10-202ENST00000539839 3282 ntBASIC17.72■□□□□ 0.43
BRCA1P38398 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
BRCA1P38398 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
BRCA1P38398 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
BRCA1P38398 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 AC139712.1-201ENST00000378256 1875 ntBASIC17.71■□□□□ 0.43
BRCA1P38398 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
BRCA1P38398 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC17.71■□□□□ 0.43
BRCA1P38398 RN7SL288P-201ENST00000490496 291 ntBASIC17.71■□□□□ 0.43
BRCA1P38398 VENTXP3-201ENST00000546480 773 ntBASIC17.71■□□□□ 0.43
BRCA1P38398 NDUFB10P1-201ENST00000567319 521 ntBASIC17.71■□□□□ 0.43
BRCA1P38398 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 AL591424.3-201ENST00000614278 872 ntBASIC17.71■□□□□ 0.43
BRCA1P38398 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC17.71■□□□□ 0.43
BRCA1P38398 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
BRCA1P38398 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
BRCA1P38398 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.71■□□□□ 0.43
BRCA1P38398 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
BRCA1P38398 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms