Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ATF6B-209ENST00000375201 2624 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.072e-7■□□□□ 9.6
YBX3P16989 ZFAND1-225ENST00000524339 811 ntTSL 215.47■□□□□ 0.073e-9■□□□□ 9.6
YBX3P16989 ZFAND1-207ENST00000519464 1006 ntTSL 515.37■□□□□ 0.053e-9■□□□□ 9.6
YBX3P16989 ZFAND1-209ENST00000519820 582 ntTSL 215.37■□□□□ 0.053e-9■□□□□ 9.6
YBX3P16989 ZFAND1-223ENST00000523431 784 ntTSL 515.37■□□□□ 0.053e-9■□□□□ 9.6
YBX3P16989 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC15.09■□□□□ 0.012e-7■□□□□ 9.6
YBX3P16989 TRIT1-201ENST00000316891 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -02e-7■□□□□ 9.6
YBX3P16989 TRIT1-215ENST00000541099 545 ntTSL 1 (best) BASIC15.01□□□□□ -0.012e-7■□□□□ 9.6
YBX3P16989 ERGIC1-203ENST00000518247 554 ntTSL 414.89□□□□□ -0.032e-7■□□□□ 9.6
YBX3P16989 ZFAND1-202ENST00000517353 841 ntTSL 314.73□□□□□ -0.053e-9■□□□□ 9.6
YBX3P16989 ZFAND1-219ENST00000522520 1705 ntTSL 1 (best) BASIC14.35□□□□□ -0.113e-9■□□□□ 9.6
YBX3P16989 ENSA-202ENST00000339643 633 ntTSL 2 BASIC14.28□□□□□ -0.124e-8■□□□□ 9.6
YBX3P16989 ZFAND1-214ENST00000521287 772 ntTSL 3 BASIC14.24□□□□□ -0.133e-9■□□□□ 9.6
YBX3P16989 TRIT1-213ENST00000495175 1156 ntTSL 1 (best)14.03□□□□□ -0.162e-7■□□□□ 9.6
YBX3P16989 TRIT1-205ENST00000462797 2000 ntTSL 513.74□□□□□ -0.212e-7■□□□□ 9.6
YBX3P16989 ERGIC1-210ENST00000521392 566 ntTSL 413.57□□□□□ -0.242e-7■□□□□ 9.6
YBX3P16989 NAMPT-213ENST00000491027 1009 ntTSL 213.51□□□□□ -0.252e-7■□□□□ 9.6
YBX3P16989 TUBG1-203ENST00000589613 916 ntTSL 1 (best)13.34□□□□□ -0.272e-7■□□□□ 9.6
YBX3P16989 ZFAND1-222ENST00000523361 540 ntTSL 513.26□□□□□ -0.293e-9■□□□□ 9.6
YBX3P16989 MMS19-217ENST00000483626 884 ntTSL 513.17□□□□□ -0.32e-7■□□□□ 9.6
YBX3P16989 ERGIC1-204ENST00000519567 501 ntTSL 413.17□□□□□ -0.32e-7■□□□□ 9.6
YBX3P16989 ATF6B-210ENST00000375203 2620 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.312e-7■□□□□ 9.6
YBX3P16989 TRIT1-203ENST00000441669 1851 ntTSL 1 (best) BASIC12.7□□□□□ -0.382e-7■□□□□ 9.6
YBX3P16989 KANSL1-229ENST00000639531 2731 ntTSL 512.69□□□□□ -0.382e-7■□□□□ 9.6
YBX3P16989 SVBP-203ENST00000497437 708 ntTSL 312.53□□□□□ -0.42e-7■□□□□ 9.6
YBX3P16989 ENSA-209ENST00000369016 923 ntTSL 5 BASIC12.23□□□□□ -0.454e-8■□□□□ 9.6
YBX3P16989 TRIT1-211ENST00000491865 738 ntTSL 512.23□□□□□ -0.452e-7■□□□□ 9.6
YBX3P16989 KANSL1-208ENST00000574590 5147 ntAPPRIS ALT1 TSL 2 BASIC12.08□□□□□ -0.482e-7■□□□□ 9.6
YBX3P16989 KANSL1-211ENST00000575318 4935 ntTSL 5 BASIC12.04□□□□□ -0.482e-7■□□□□ 9.6
YBX3P16989 ENSA-213ENST00000509582 716 ntTSL 312.04□□□□□ -0.484e-8■□□□□ 9.6
YBX3P16989 ERGIC1-205ENST00000519796 578 ntTSL 411.78□□□□□ -0.522e-7■□□□□ 9.6
YBX3P16989 KANSL1-201ENST00000262419 5309 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.562e-7■□□□□ 9.6
YBX3P16989 KANSL1-231ENST00000639853 1425 ntTSL 511.35□□□□□ -0.592e-7■□□□□ 9.6
YBX3P16989 MED12-203ENST00000374102 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.612e-7■□□□□ 9.6
YBX3P16989 ENSA-215ENST00000638926 360 ntTSL 5 BASIC11□□□□□ -0.654e-8■□□□□ 9.6
YBX3P16989 TRIT1-210ENST00000489945 861 ntTSL 510.01□□□□□ -0.812e-7■□□□□ 9.6
YBX3P16989 ERGIC1-214ENST00000523650 488 ntTSL 39.96□□□□□ -0.822e-7■□□□□ 9.6
YBX3P16989 MED12-201ENST00000333646 6977 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.822e-7■□□□□ 9.6
YBX3P16989 KANSL1-205ENST00000572904 4973 ntAPPRIS P3 TSL 5 BASIC9.6□□□□□ -0.872e-7■□□□□ 9.6
YBX3P16989 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC9.15□□□□□ -0.943e-9■□□□□ 9.6
YBX3P16989 SF3B1-212ENST00000496458 475 ntTSL 28.99□□□□□ -0.972e-12■□□□□ 9.6
YBX3P16989 KANSL1-216ENST00000577114 629 ntTSL 58.95□□□□□ -0.982e-7■□□□□ 9.6
YBX3P16989 ENSA-212ENST00000505321 552 ntTSL 58.72□□□□□ -1.014e-8■□□□□ 9.6
YBX3P16989 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC8.68□□□□□ -1.022e-7■□□□□ 9.6
YBX3P16989 KANSL1-226ENST00000639375 3392 ntTSL 58.45□□□□□ -1.062e-7■□□□□ 9.6
YBX3P16989 PPP2R5C-214ENST00000555237 607 ntTSL 58.12□□□□□ -1.112e-7■□□□□ 9.6
YBX3P16989 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC8.1□□□□□ -1.113e-9■□□□□ 9.6
YBX3P16989 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC7.88□□□□□ -1.153e-9■□□□□ 9.6
YBX3P16989 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC7.84□□□□□ -1.154e-8■□□□□ 9.6
YBX3P16989 ZFAND1-211ENST00000520604 664 ntTSL 37.69□□□□□ -1.183e-9■□□□□ 9.6
YBX3P16989 PPP2R5C-225ENST00000557071 798 ntTSL 37.66□□□□□ -1.182e-7■□□□□ 9.6
YBX3P16989 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.24e-8■□□□□ 9.6
YBX3P16989 ZFAND1-215ENST00000521742 614 ntTSL 37.18□□□□□ -1.263e-9■□□□□ 9.6
YBX3P16989 PPP2R5C-232ENST00000561006 483 ntTSL 57.07□□□□□ -1.282e-7■□□□□ 9.6
YBX3P16989 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC7.06□□□□□ -1.282e-7■□□□□ 9.6
YBX3P16989 TRIT1-207ENST00000467774 464 ntTSL 27□□□□□ -1.292e-7■□□□□ 9.6
YBX3P16989 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.82□□□□□ -1.324e-8■□□□□ 9.6
YBX3P16989 TRIT1-206ENST00000465417 499 ntTSL 56.53□□□□□ -1.362e-7■□□□□ 9.6
YBX3P16989 ZFAND1-212ENST00000520635 882 ntTSL 56.42□□□□□ -1.383e-9■□□□□ 9.6
YBX3P16989 PPP2R5C-231ENST00000557716 645 ntTSL 55.71□□□□□ -1.52e-7■□□□□ 9.6
YBX3P16989 ZFAND1-216ENST00000521885 568 ntTSL 45.54□□□□□ -1.523e-9■□□□□ 9.6
YBX3P16989 NAMPT-208ENST00000467730 318 ntTSL 25.46□□□□□ -1.542e-7■□□□□ 9.6
YBX3P16989 ENSA-203ENST00000354702 569 ntTSL 55.41□□□□□ -1.544e-8■□□□□ 9.6
YBX3P16989 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.24□□□□□ -1.574e-8■□□□□ 9.6
YBX3P16989 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.89□□□□□ -1.794e-8■□□□□ 9.6
YBX3P16989 ZFAND1-224ENST00000524305 2719 ntTSL 23.58□□□□□ -1.843e-9■□□□□ 9.6
YBX3P16989 GUK1-235ENST00000493138 694 ntTSL 333.61■■■□□ 2.972e-15■□□□□ 9.6
YBX3P16989 GUK1-205ENST00000366722 850 ntTSL 3 BASIC30.7■■■□□ 2.512e-15■□□□□ 9.6
YBX3P16989 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC29.22■■■□□ 2.272e-15■□□□□ 9.6
YBX3P16989 GUK1-213ENST00000453943 656 ntTSL 1 (best)28.89■■■□□ 2.222e-15■□□□□ 9.6
YBX3P16989 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC27.72■■■□□ 2.032e-15■□□□□ 9.6
YBX3P16989 GUK1-204ENST00000366721 689 ntTSL 3 BASIC25.48■■□□□ 1.672e-15■□□□□ 9.6
YBX3P16989 GUK1-230ENST00000485838 774 ntTSL 325.19■■□□□ 1.622e-15■□□□□ 9.6
YBX3P16989 GUK1-239ENST00000498115 796 ntTSL 522.92■■□□□ 1.262e-15■□□□□ 9.6
YBX3P16989 GUK1-237ENST00000495999 555 ntTSL 321.1■□□□□ 0.972e-15■□□□□ 9.6
YBX3P16989 GUK1-216ENST00000464858 633 ntTSL 320.42■□□□□ 0.862e-15■□□□□ 9.6
YBX3P16989 GUK1-206ENST00000366723 845 ntTSL 5 BASIC19.57■□□□□ 0.722e-15■□□□□ 9.6
YBX3P16989 GUK1-211ENST00000412265 1012 ntTSL 518.5■□□□□ 0.552e-15■□□□□ 9.6
YBX3P16989 GUK1-212ENST00000435153 865 ntTSL 317.02■□□□□ 0.322e-15■□□□□ 9.6
YBX3P16989 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.14■■■□□ 2.584e-7■□□□□ 9.6
YBX3P16989 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.434e-7■□□□□ 9.6
YBX3P16989 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.284e-7■□□□□ 9.6
YBX3P16989 MIR6721-201ENST00000617181 87 ntBASIC8.96□□□□□ -0.984e-7■□□□□ 9.6
YBX3P16989 SPOUT1-204ENST00000467582 898 ntTSL 217.66■□□□□ 0.423e-7■□□□□ 9.6
YBX3P16989 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.163e-7■□□□□ 9.6
YBX3P16989 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC25.91■■□□□ 1.746e-7■□□□□ 9.6
YBX3P16989 GGA2-201ENST00000309859 5973 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.696e-7■□□□□ 9.6
YBX3P16989 GTSF1-207ENST00000552336 520 ntTSL 39.27□□□□□ -0.932e-9■□□□□ 9.6
YBX3P16989 NSMCE1-209ENST00000565384 580 ntTSL 316.11■□□□□ 0.172e-10■□□□□ 9.6
YBX3P16989 NSMCE1-203ENST00000562039 260 ntTSL 312.61□□□□□ -0.392e-10■□□□□ 9.6
YBX3P16989 NCAPD2-210ENST00000541399 584 ntTSL 58.49□□□□□ -1.053e-9■□□□□ 9.6
YBX3P16989 LINC00649-217ENST00000616030 714 ntTSL 5 BASIC13.75□□□□□ -0.212e-6■□□□□ 9.6
YBX3P16989 LINC00649-210ENST00000599421 728 ntTSL 213.44□□□□□ -0.262e-6■□□□□ 9.6
YBX3P16989 LINC00649-209ENST00000597626 612 ntTSL 5 BASIC13.12□□□□□ -0.312e-6■□□□□ 9.6
YBX3P16989 LINC00649-212ENST00000601471 538 ntTSL 5 BASIC12.49□□□□□ -0.412e-6■□□□□ 9.6
YBX3P16989 LINC00649-208ENST00000596365 682 ntTSL 512.45□□□□□ -0.422e-6■□□□□ 9.6
YBX3P16989 LINC00649-202ENST00000400353 2090 ntTSL 311.67□□□□□ -0.542e-6■□□□□ 9.6
YBX3P16989 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC7.07□□□□□ -1.282e-6■□□□□ 9.6
YBX3P16989 LINC00649-219ENST00000622171 207 ntTSL 56.01□□□□□ -1.452e-6■□□□□ 9.6
YBX3P16989 KRT19-207ENST00000593096 728 ntTSL 320.52■□□□□ 0.883e-8■□□□□ 9.6
Retrieved 100 of 29,075 protein–RNA pairs in 164.4 ms