RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 AEBP2Q6ZN18 517 aaPredicted RBP32.94■■■□□ 2.86
SF3B1-212ENST00000496458 CHIC1Q5VXU3 224 aa32.03■■■□□ 2.72
SF3B1-212ENST00000496458 PHF23Q9BUL5 403 aaPredicted RBP28.16■■■□□ 2.1
SF3B1-212ENST00000496458 SENP3Q9H4L4 574 aaPredicted RBP27.96■■■□□ 2.07
SF3B1-212ENST00000496458 FOXD1Q16676 465 aa25.98■■□□□ 1.75
SF3B1-212ENST00000496458 PLPPR3Q6T4P5 718 aa25.96■■□□□ 1.75
SF3B1-212ENST00000496458 PPP6R1Q9UPN7 881 aa24.9■■□□□ 1.58
SF3B1-212ENST00000496458 ADRA2BP18089 450 aa24.88■■□□□ 1.57
SF3B1-212ENST00000496458 PIAS4Q8N2W9 510 aaPredicted RBP24.49■■□□□ 1.51
SF3B1-212ENST00000496458 MSH5O43196 834 aa23.99■■□□□ 1.43
SF3B1-212ENST00000496458 PPP4R3CPQ6ZMV5 832 aa22.87■■□□□ 1.25
SF3B1-212ENST00000496458 SCAF1Q9H7N4 1312 aaKnown RBP22.74■■□□□ 1.23
SF3B1-212ENST00000496458 MAPK8IP2Q13387 824 aaPredicted RBP22.61■■□□□ 1.21
SF3B1-212ENST00000496458 DMRT2Q9Y5R5 561 aa22.29■■□□□ 1.16
SF3B1-212ENST00000496458 CNKSR2Q8WXI2 1034 aa22.24■■□□□ 1.15
SF3B1-212ENST00000496458 KCNA4P22459 653 aa22.22■■□□□ 1.15
SF3B1-212ENST00000496458 NCBP3Q53F19 620 aaKnown RBP22.22■■□□□ 1.15
SF3B1-212ENST00000496458 POTEDQ86YR6 584 aa22.08■■□□□ 1.13
SF3B1-212ENST00000496458 NPM3O75607 178 aaKnown RBP21.91■■□□□ 1.1
SF3B1-212ENST00000496458 RNF216Q9NWF9 866 aaPredicted RBP21.83■■□□□ 1.09
SF3B1-212ENST00000496458 HOXD11P31277 338 aaPredicted RBP21.77■■□□□ 1.08
SF3B1-212ENST00000496458 DCAF8L1A6NGE4 600 aa21.41■■□□□ 1.02
SF3B1-212ENST00000496458 DNAJC5BQ9UF47 199 aa21.21■□□□□ 0.99
SF3B1-212ENST00000496458 SLC4A1APQ9BWU0 796 aaKnown RBP21.13■□□□□ 0.97
SF3B1-212ENST00000496458 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.79■□□□□ 0.92
SF3B1-212ENST00000496458 SLC4A2P04920 1241 aa20.72■□□□□ 0.91
SF3B1-212ENST00000496458 RNF39Q9H2S5 420 aa20.54■□□□□ 0.88
SF3B1-212ENST00000496458 FOXD4L1Q9NU39 408 aa20.47■□□□□ 0.87
SF3B1-212ENST00000496458 ZBTB22O15209 634 aa20.44■□□□□ 0.86
SF3B1-212ENST00000496458 EHMT2Q96KQ7 1210 aa20.43■□□□□ 0.86
SF3B1-212ENST00000496458 U3KPZ7 1027 aaPredicted RBP20.43■□□□□ 0.86
SF3B1-212ENST00000496458 C1QBPQ07021 282 aaKnown RBP20.28■□□□□ 0.84
SF3B1-212ENST00000496458 MYCNP04198 464 aaPredicted RBP20.25■□□□□ 0.83
SF3B1-212ENST00000496458 CSRNP3Q8WYN3 585 aa20.2■□□□□ 0.82
SF3B1-212ENST00000496458 CACNB1Q02641 598 aaPredicted RBP20.13■□□□□ 0.81
SF3B1-212ENST00000496458 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.1■□□□□ 0.81
SF3B1-212ENST00000496458 HNRNPUL2Q1KMD3 747 aaKnown RBP20.1■□□□□ 0.81
SF3B1-212ENST00000496458 SAMD1Q6SPF0 538 aaPredicted RBP20.03■□□□□ 0.8
SF3B1-212ENST00000496458 APLP2Q06481 763 aa19.93■□□□□ 0.78
SF3B1-212ENST00000496458 SPINK5Q9NQ38 1064 aaPredicted RBP19.92■□□□□ 0.78
SF3B1-212ENST00000496458 CAPN15O75808 1086 aa19.85■□□□□ 0.77
SF3B1-212ENST00000496458 TRHP20396 242 aaPredicted RBP19.73■□□□□ 0.75
SF3B1-212ENST00000496458 ATF5Q9Y2D1 282 aaPredicted RBP19.73■□□□□ 0.75
SF3B1-212ENST00000496458 ATXN8OSP0DMR3 200 aa19.72■□□□□ 0.75
SF3B1-212ENST00000496458 ZNF219Q9P2Y4 722 aaPredicted RBP19.69■□□□□ 0.74
SF3B1-212ENST00000496458 DSG3P32926 999 aa19.51■□□□□ 0.71
SF3B1-212ENST00000496458 ABCB7O75027 752 aa19.48■□□□□ 0.71
SF3B1-212ENST00000496458 POLA2Q14181 598 aa19.36■□□□□ 0.69
SF3B1-212ENST00000496458 ZBTB12Q9Y330 459 aaPredicted RBP19.01■□□□□ 0.63
SF3B1-212ENST00000496458 FBLN2P98095 1184 aa18.9■□□□□ 0.62
SF3B1-212ENST00000496458 MKRN4PQ13434 485 aaPredicted RBP18.86■□□□□ 0.61
SF3B1-212ENST00000496458 OSCARQ8IYS5 282 aa18.73■□□□□ 0.59
SF3B1-212ENST00000496458 RBM42Q9BTD8 480 aaKnown RBP18.6■□□□□ 0.57
SF3B1-212ENST00000496458 SPDYE2BA6NHP3 402 aa18.49■□□□□ 0.55
SF3B1-212ENST00000496458 SPDYE6P0CI01 402 aa18.49■□□□□ 0.55
SF3B1-212ENST00000496458 SPDYE2Q495Y8 402 aa18.49■□□□□ 0.55
SF3B1-212ENST00000496458 ZNF692Q9BU19 519 aaPredicted RBP18.41■□□□□ 0.54
SF3B1-212ENST00000496458 SPDYE4A6NLX3 237 aa18.38■□□□□ 0.53
SF3B1-212ENST00000496458 AKT1S1Q96B36 256 aa18.33■□□□□ 0.52
SF3B1-212ENST00000496458 SSUH2Q9Y2M2 353 aa18.33■□□□□ 0.52
SF3B1-212ENST00000496458 FKBP8Q14318 412 aa18.3■□□□□ 0.52
SF3B1-212ENST00000496458 PABPN1Q86U42 306 aaKnown RBP eCLIP18.18■□□□□ 0.5
SF3B1-212ENST00000496458 REM2Q8IYK8 340 aaPredicted RBP18.17■□□□□ 0.5
SF3B1-212ENST00000496458 PROM2Q8N271 834 aa18.02■□□□□ 0.48
SF3B1-212ENST00000496458 PITPNM1O00562 1244 aa17.98■□□□□ 0.47
SF3B1-212ENST00000496458 SPDYE1Q8NFV5 336 aaPredicted RBP17.98■□□□□ 0.47
SF3B1-212ENST00000496458 CLEC11AQ9Y240 323 aa17.95■□□□□ 0.46
SF3B1-212ENST00000496458 CHRDL2Q6WN34 429 aa17.89■□□□□ 0.45
SF3B1-212ENST00000496458 STAG3Q9UJ98 1225 aa17.82■□□□□ 0.44
SF3B1-212ENST00000496458 PRR29P0C7W0 189 aa17.74■□□□□ 0.43
SF3B1-212ENST00000496458 FXR2P51116 673 aaKnown RBP eCLIP17.64■□□□□ 0.412e-12■■□□□ 13.8
SF3B1-212ENST00000496458 FBXO3Q9UK99 471 aa17.64■□□□□ 0.41
SF3B1-212ENST00000496458 PIP4P2Q8N4L2 257 aa17.63■□□□□ 0.41
SF3B1-212ENST00000496458 PRKAR2AP13861 404 aaKnown RBP17.53■□□□□ 0.4
SF3B1-212ENST00000496458 CHADLQ6NUI6 762 aa17.52■□□□□ 0.4
SF3B1-212ENST00000496458 CREBZFQ9NS37 354 aa17.48■□□□□ 0.39
SF3B1-212ENST00000496458 POTEHQ6S545 545 aa17.47■□□□□ 0.39
SF3B1-212ENST00000496458 MIER1Q8N108 512 aa17.45■□□□□ 0.38
SF3B1-212ENST00000496458 VASPP50552 380 aaPredicted RBP17.44■□□□□ 0.38
SF3B1-212ENST00000496458 PLCD3Q8N3E9 789 aa17.42■□□□□ 0.38
SF3B1-212ENST00000496458 PLEKHG5O94827 1062 aa17.36■□□□□ 0.37
SF3B1-212ENST00000496458 FARP1Q9Y4F1 1045 aaPredicted RBP17.31■□□□□ 0.36
SF3B1-212ENST00000496458 MNX1P50219 401 aaPredicted RBP17.27■□□□□ 0.36
SF3B1-212ENST00000496458 ZBTB47Q9UFB7 747 aaPredicted RBP17.2■□□□□ 0.34
SF3B1-212ENST00000496458 NPM1P06748 294 aaKnown RBP eCLIP17.18■□□□□ 0.34
SF3B1-212ENST00000496458 IFNLR1Q8IU57 520 aaPredicted RBP17.18■□□□□ 0.34
SF3B1-212ENST00000496458 KLHL34Q8N239 644 aa17.18■□□□□ 0.34
SF3B1-212ENST00000496458 HAX1O00165 279 aa17.11■□□□□ 0.33
SF3B1-212ENST00000496458 C19orf67A6NJJ6 358 aa17.04■□□□□ 0.32
SF3B1-212ENST00000496458 CD44P16070 742 aaKnown RBP17.03■□□□□ 0.32
SF3B1-212ENST00000496458 NUBP1P53384 320 aa17■□□□□ 0.31
SF3B1-212ENST00000496458 SPOCK2Q92563 424 aa16.99■□□□□ 0.31
SF3B1-212ENST00000496458 RASEFQ8IZ41 740 aa16.98■□□□□ 0.31
SF3B1-212ENST00000496458 EVX2Q03828 476 aa16.95■□□□□ 0.3
SF3B1-212ENST00000496458 PAK3O75914 559 aaPredicted RBP16.94■□□□□ 0.3
SF3B1-212ENST00000496458 TSPYL2Q9H2G4 693 aaPredicted RBP16.93■□□□□ 0.3
SF3B1-212ENST00000496458 ZRANB1Q9UGI0 708 aa16.91■□□□□ 0.3
SF3B1-212ENST00000496458 FAM212AQ96EL1 285 aa16.88■□□□□ 0.29
SF3B1-212ENST00000496458 DCAF8Q5TAQ9 597 aa16.84■□□□□ 0.29
SF3B1-212ENST00000496458 CIZ1Q9ULV3 898 aaPredicted RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms