RNA–Protein interactions for RNA: ENST00000427447.5

LINC00649-203, long intergenic non-protein coding RNA 649, humanhuman

TSL 1 (best) BASIC

Gene LINC00649, Length 9,124 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00649-203ENST00000427447 MYT1Q01538 1121 aa14□□□□□ -0.17
LINC00649-203ENST00000427447 PELP1Q8IZL8 1130 aaKnown RBP13.54□□□□□ -0.24
LINC00649-203ENST00000427447 TTBK1Q5TCY1 1321 aaPredicted RBP13.11□□□□□ -0.31
LINC00649-203ENST00000427447 ERICH6Q7L0X2 663 aa12.78□□□□□ -0.36
LINC00649-203ENST00000427447 YTHDC1Q96MU7 727 aaKnown RBP12.73□□□□□ -0.37
LINC00649-203ENST00000427447 CCER1Q8TC90 406 aaPredicted RBP12.63□□□□□ -0.39
LINC00649-203ENST00000427447 RANGAP1P46060 587 aaPredicted RBP12.53□□□□□ -0.4
LINC00649-203ENST00000427447 CENPBP07199 599 aaPredicted RBP12.16□□□□□ -0.46
LINC00649-203ENST00000427447 GLIPR1L2Q4G1C9 344 aa12.07□□□□□ -0.48
LINC00649-203ENST00000427447 SLC24A1O60721 1099 aa11.92□□□□□ -0.5
LINC00649-203ENST00000427447 DCAF8L2P0C7V8 631 aa11.72□□□□□ -0.53
LINC00649-203ENST00000427447 NEFLP07196 543 aa11.71□□□□□ -0.54
LINC00649-203ENST00000427447 RTL5Q5HYW3 569 aaPredicted RBP11.67□□□□□ -0.54
LINC00649-203ENST00000427447 DAXXQ9UER7 740 aaPredicted RBP11.64□□□□□ -0.55
LINC00649-203ENST00000427447 ZEB1P37275 1124 aaPredicted RBP11.63□□□□□ -0.55
LINC00649-203ENST00000427447 POLR3GLQ9BT43 218 aa11.63□□□□□ -0.55
LINC00649-203ENST00000427447 CLSPNQ9HAW4 1339 aa11.59□□□□□ -0.55
LINC00649-203ENST00000427447 EHMT2Q96KQ7 1210 aa11.57□□□□□ -0.56
LINC00649-203ENST00000427447 MYT1LQ9UL68 1186 aa11.57□□□□□ -0.56
LINC00649-203ENST00000427447 EIF5BO60841 1220 aaKnown RBP11.39□□□□□ -0.59
LINC00649-203ENST00000427447 FAM9AQ8IZU1 332 aaPredicted RBP11.36□□□□□ -0.59
LINC00649-203ENST00000427447 NCLP19338 710 aaKnown RBP11.34□□□□□ -0.59
LINC00649-203ENST00000427447 TNNT2P45379 298 aaPredicted RBP11.34□□□□□ -0.59
LINC00649-203ENST00000427447 ZNF316A6NFI3 1004 aaPredicted RBP11.25□□□□□ -0.61
LINC00649-203ENST00000427447 ZNF326Q5BKZ1 582 aaKnown RBP11.22□□□□□ -0.61
LINC00649-203ENST00000427447 CDK11BP21127 795 aaKnown RBP11.18□□□□□ -0.62
LINC00649-203ENST00000427447 TRIM44Q96DX7 344 aaPredicted RBP11.16□□□□□ -0.62
LINC00649-203ENST00000427447 PTMSP20962 102 aa11.14□□□□□ -0.63
LINC00649-203ENST00000427447 ANP32BQ92688 251 aaKnown RBP11.07□□□□□ -0.64
LINC00649-203ENST00000427447 SUPT5HO00267 1087 aaKnown RBP11□□□□□ -0.65
LINC00649-203ENST00000427447 HMGB1P09429 215 aaKnown RBP11□□□□□ -0.65
LINC00649-203ENST00000427447 NISCHQ9Y2I1 1504 aa10.96□□□□□ -0.66
LINC00649-203ENST00000427447 CALRP27797 417 aaKnown RBP10.94□□□□□ -0.66
LINC00649-203ENST00000427447 APLP2Q06481 763 aa10.92□□□□□ -0.66
LINC00649-203ENST00000427447 CDK11AQ9UQ88 783 aaPredicted RBP10.9□□□□□ -0.66
LINC00649-203ENST00000427447 ATP1B4Q9UN42 357 aaPredicted RBP10.9□□□□□ -0.66
LINC00649-203ENST00000427447 PCGF6Q9BYE7 350 aa10.88□□□□□ -0.67
LINC00649-203ENST00000427447 ANP32AP39687 249 aaKnown RBP10.84□□□□□ -0.67
LINC00649-203ENST00000427447 ERICH6BQ5W0A0 696 aa10.82□□□□□ -0.68
LINC00649-203ENST00000427447 BCL11AQ9H165 835 aa10.81□□□□□ -0.68
LINC00649-203ENST00000427447 HOMEZQ8IX15 550 aa10.81□□□□□ -0.68
LINC00649-203ENST00000427447 ANP32EQ9BTT0 268 aa10.75□□□□□ -0.69
LINC00649-203ENST00000427447 HRCP23327 699 aa10.74□□□□□ -0.69
LINC00649-203ENST00000427447 PODXL2Q9NZ53 605 aa10.73□□□□□ -0.69
LINC00649-203ENST00000427447 CNGB1Q14028 1251 aaPredicted RBP10.7□□□□□ -0.7
LINC00649-203ENST00000427447 SHROOM4Q9ULL8 1493 aa10.7□□□□□ -0.7
LINC00649-203ENST00000427447 AMER1Q5JTC6 1135 aaPredicted RBP10.69□□□□□ -0.7
LINC00649-203ENST00000427447 LAS1LQ9Y4W2 734 aaKnown RBP10.67□□□□□ -0.7
LINC00649-203ENST00000427447 APPP05067 770 aa10.65□□□□□ -0.7
LINC00649-203ENST00000427447 GTF3C3Q9Y5Q9 886 aa10.65□□□□□ -0.7
LINC00649-203ENST00000427447 TNNT3P45378 269 aaPredicted RBP10.63□□□□□ -0.71
LINC00649-203ENST00000427447 ARID4BQ4LE39 1312 aaPredicted RBP10.62□□□□□ -0.71
LINC00649-203ENST00000427447 C14orf37Q86TY3 774 aa10.62□□□□□ -0.71
LINC00649-203ENST00000427447 NEFMP07197 916 aa10.61□□□□□ -0.71
LINC00649-203ENST00000427447 A0A0U1RQG5 324 aaPredicted RBP10.57□□□□□ -0.72
LINC00649-203ENST00000427447 GOLGA6L22H0YM25 854 aa10.55□□□□□ -0.72
LINC00649-203ENST00000427447 NAP1L5Q96NT1 182 aaPredicted RBP10.55□□□□□ -0.72
LINC00649-203ENST00000427447 STK11IPQ8N1F8 1099 aa10.55□□□□□ -0.72
LINC00649-203ENST00000427447 HAP1P54257 671 aaPredicted RBP10.54□□□□□ -0.72
LINC00649-203ENST00000427447 PNNQ9H307 717 aaKnown RBP10.53□□□□□ -0.72
LINC00649-203ENST00000427447 ARXQ96QS3 562 aa10.52□□□□□ -0.73
LINC00649-203ENST00000427447 HSP90AA1P07900 732 aaKnown RBP10.51□□□□□ -0.73
LINC00649-203ENST00000427447 ACIN1Q9UKV3 1341 aaKnown RBP10.49□□□□□ -0.73
LINC00649-203ENST00000427447 ZBTB47Q9UFB7 747 aaPredicted RBP10.48□□□□□ -0.73
LINC00649-203ENST00000427447 NPM2Q86SE8 214 aaKnown RBP10.48□□□□□ -0.73
LINC00649-203ENST00000427447 DIEXFQ68CQ4 756 aaKnown RBP10.47□□□□□ -0.73
LINC00649-203ENST00000427447 PKNOX2Q96KN3 472 aa10.46□□□□□ -0.73
LINC00649-203ENST00000427447 NEFHP12036 1026 aa10.46□□□□□ -0.74
LINC00649-203ENST00000427447 PRKCSHP14314 528 aaPredicted RBP10.45□□□□□ -0.74
LINC00649-203ENST00000427447 BCANQ96GW7 911 aa10.44□□□□□ -0.74
LINC00649-203ENST00000427447 UPF2Q9HAU5 1272 aaKnown RBP10.44□□□□□ -0.74
LINC00649-203ENST00000427447 PTMAP06454 111 aaKnown RBP10.41□□□□□ -0.74
LINC00649-203ENST00000427447 TRIM26Q12899 539 aaPredicted RBP10.41□□□□□ -0.74
LINC00649-203ENST00000427447 GOLGA6L6A8MZA4 724 aa10.41□□□□□ -0.74
LINC00649-203ENST00000427447 SETQ01105 290 aaPredicted RBP10.4□□□□□ -0.74
LINC00649-203ENST00000427447 RSPH6AQ9H0K4 717 aa10.4□□□□□ -0.74
LINC00649-203ENST00000427447 DNTTIP2Q5QJE6 756 aaKnown RBP10.39□□□□□ -0.75
LINC00649-203ENST00000427447 CHAF1AQ13111 956 aaPredicted RBP10.39□□□□□ -0.75
LINC00649-203ENST00000427447 NCBP3Q53F19 620 aaKnown RBP10.38□□□□□ -0.75
LINC00649-203ENST00000427447 TULP1O00294 542 aaPredicted RBP10.37□□□□□ -0.75
LINC00649-203ENST00000427447 PDE4CQ08493 712 aa10.36□□□□□ -0.75
LINC00649-203ENST00000427447 NBR1Q14596 966 aa10.36□□□□□ -0.75
LINC00649-203ENST00000427447 USP35Q9P2H5 1018 aa10.36□□□□□ -0.75
LINC00649-203ENST00000427447 HSP90AA2PQ14568 343 aaPredicted RBP10.36□□□□□ -0.75
LINC00649-203ENST00000427447 HMGB1P1B2RPK0 211 aaPredicted RBP10.34□□□□□ -0.75
LINC00649-203ENST00000427447 DDRGK1Q96HY6 314 aa10.34□□□□□ -0.75
LINC00649-203ENST00000427447 HSP90B1P14625 803 aaKnown RBP10.34□□□□□ -0.75
LINC00649-203ENST00000427447 PPM1GO15355 546 aaPredicted RBP10.34□□□□□ -0.75
LINC00649-203ENST00000427447 GOLGA6L3A6NEY3 463 aa10.33□□□□□ -0.76
LINC00649-203ENST00000427447 VSIG10Q8N0Z9 540 aa10.32□□□□□ -0.76
LINC00649-203ENST00000427447 GOLGA6L1Q8N7Z2 621 aa10.32□□□□□ -0.76
LINC00649-203ENST00000427447 CANXP27824 592 aaKnown RBP10.32□□□□□ -0.76
LINC00649-203ENST00000427447 CCDC9Q9Y3X0 531 aaKnown RBP10.31□□□□□ -0.76
LINC00649-203ENST00000427447 MEX3CQ5U5Q3 659 aaKnown RBP10.3□□□□□ -0.76
LINC00649-203ENST00000427447 L1TD1Q5T7N2 865 aaKnown RBP10.28□□□□□ -0.76
LINC00649-203ENST00000427447 NRDCO43847 1150 aa10.27□□□□□ -0.77
LINC00649-203ENST00000427447 ZNF526Q8TF50 670 aaPredicted RBP10.27□□□□□ -0.77
LINC00649-203ENST00000427447 TAF7LQ5H9L4 462 aa10.26□□□□□ -0.77
LINC00649-203ENST00000427447 UBTFP17480 764 aaKnown RBP10.26□□□□□ -0.77
LINC00649-203ENST00000427447 PATL2C9JE40 543 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms