Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC11O43248 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 WASH3P-207ENST00000560956 1394 ntBASIC15.32■□□□□ 0.04
HOXC11O43248 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
HOXC11O43248 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC11O43248 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HOXC11O43248 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 AC003102.2-201ENST00000589195 1469 ntBASIC15.32■□□□□ 0.04
HOXC11O43248 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
HOXC11O43248 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC11O43248 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.31■□□□□ 0.04
HOXC11O43248 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.31■□□□□ 0.04
HOXC11O43248 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HOXC11O43248 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 AL662890.1-201ENST00000396818 632 ntBASIC15.31■□□□□ 0.04
HOXC11O43248 KRTAP19-9P-201ENST00000421795 191 ntBASIC15.31■□□□□ 0.04
HOXC11O43248 FAM58BP-201ENST00000439056 645 ntBASIC15.31■□□□□ 0.04
HOXC11O43248 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.31■□□□□ 0.04
HOXC11O43248 ALG3P1-201ENST00000508806 1114 ntBASIC15.31■□□□□ 0.04
HOXC11O43248 AC022217.1-201ENST00000521069 738 ntBASIC15.31■□□□□ 0.04
HOXC11O43248 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.31■□□□□ 0.04
HOXC11O43248 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.31■□□□□ 0.04
HOXC11O43248 AC013355.1-201ENST00000562625 723 ntBASIC15.31■□□□□ 0.04
HOXC11O43248 AC100827.2-201ENST00000563214 1194 ntBASIC15.31■□□□□ 0.04
HOXC11O43248 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
HOXC11O43248 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.31■□□□□ 0.04
HOXC11O43248 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.31■□□□□ 0.04
HOXC11O43248 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
HOXC11O43248 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC15.31■□□□□ 0.04
HOXC11O43248 AC138627.1-207ENST00000641560 1006 ntBASIC15.31■□□□□ 0.04
HOXC11O43248 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
HOXC11O43248 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.31■□□□□ 0.04
HOXC11O43248 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.31■□□□□ 0.04
HOXC11O43248 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.31■□□□□ 0.04
HOXC11O43248 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HOXC11O43248 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HOXC11O43248 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC11O43248 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HOXC11O43248 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC11O43248 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC11O43248 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
HOXC11O43248 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC11O43248 SDCCAG3P2-201ENST00000326105 1023 ntBASIC15.3■□□□□ 0.04
HOXC11O43248 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.3■□□□□ 0.04
HOXC11O43248 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.3■□□□□ 0.04
HOXC11O43248 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
HOXC11O43248 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
HOXC11O43248 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC11O43248 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
HOXC11O43248 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC11O43248 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC15.3■□□□□ 0.04
HOXC11O43248 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HOXC11O43248 RNMTL1P1-201ENST00000454103 560 ntBASIC15.3■□□□□ 0.04
HOXC11O43248 TUBBP5-203ENST00000508529 1334 ntBASIC15.3■□□□□ 0.04
HOXC11O43248 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC11O43248 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.3■□□□□ 0.04
HOXC11O43248 RHOQP1-201ENST00000555758 579 ntBASIC15.3■□□□□ 0.04
HOXC11O43248 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.3■□□□□ 0.04
HOXC11O43248 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC11O43248 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HOXC11O43248 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC15.3■□□□□ 0.04
HOXC11O43248 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.3■□□□□ 0.04
HOXC11O43248 RN7SL163P-201ENST00000583100 276 ntBASIC15.3■□□□□ 0.04
HOXC11O43248 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms