Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 SDHAP3-202ENST00000515467 728 ntBASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 AC009407.1-201ENST00000568958 598 ntBASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC15.53■□□□□ 0.08
TRIM56Q9BRZ2 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 MIR943-201ENST00000401286 94 ntBASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 AC092364.2-202ENST00000597012 1073 ntBASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRIM56Q9BRZ2 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 AP001267.2-201ENST00000532619 2086 ntBASIC15.52■□□□□ 0.07
TRIM56Q9BRZ2 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 AC104457.1-201ENST00000401024 814 ntBASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 AL158212.4-201ENST00000624062 1286 ntBASIC15.51■□□□□ 0.07
TRIM56Q9BRZ2 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms