Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 SERF2-206ENST00000409291 807 ntTSL 3 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AZGP1P1-201ENST00000411909 902 ntBASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 MSRA-203ENST00000441698 788 ntTSL 2 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AL596276.2-201ENST00000447525 331 ntBASIC14.62□□□□□ -0.07
COL28A1Q2UY09 NUP210P1-202ENST00000504322 710 ntBASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AP003680.1-201ENST00000598970 3660 ntBASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AC007663.3-201ENST00000609632 465 ntBASIC14.62□□□□□ -0.07
COL28A1Q2UY09 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.62□□□□□ -0.07
COL28A1Q2UY09 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 AC022532.1-201ENST00000624563 1728 ntBASIC14.61□□□□□ -0.07
COL28A1Q2UY09 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 HSPB1P2-201ENST00000448722 546 ntBASIC14.61□□□□□ -0.07
COL28A1Q2UY09 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 RN7SL774P-201ENST00000577467 290 ntBASIC14.61□□□□□ -0.07
COL28A1Q2UY09 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 AC009084.3-201ENST00000623356 437 ntBASIC14.61□□□□□ -0.07
COL28A1Q2UY09 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 TNRC18P2-201ENST00000417666 2714 ntBASIC14.61□□□□□ -0.07
COL28A1Q2UY09 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL28A1Q2UY09 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL28A1Q2UY09 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms