Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC12.49□□□□□ -0.41
CDX1P47902 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CDX1P47902 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CDX1P47902 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC12.49□□□□□ -0.41
CDX1P47902 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CDX1P47902 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 FO393414.2-201ENST00000405153 598 ntBASIC12.49□□□□□ -0.41
CDX1P47902 RAC2-204ENST00000406508 893 ntTSL 5 BASIC12.49□□□□□ -0.41
CDX1P47902 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC12.49□□□□□ -0.41
CDX1P47902 AC002472.2-201ENST00000442739 958 ntBASIC12.49□□□□□ -0.41
CDX1P47902 UGT1A2P-201ENST00000454886 866 ntBASIC12.49□□□□□ -0.41
CDX1P47902 RN7SL618P-201ENST00000477850 296 ntBASIC12.49□□□□□ -0.41
CDX1P47902 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 PRR29-204ENST00000577953 565 ntTSL 4 BASIC12.49□□□□□ -0.41
CDX1P47902 RN7SL204P-201ENST00000582831 262 ntBASIC12.49□□□□□ -0.41
CDX1P47902 AC138761.1-201ENST00000584393 385 ntBASIC12.49□□□□□ -0.41
CDX1P47902 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC12.49□□□□□ -0.41
CDX1P47902 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 AC008761.3-201ENST00000624803 892 ntBASIC12.49□□□□□ -0.41
CDX1P47902 HFE2-206ENST00000634927 506 ntTSL 4 BASIC12.49□□□□□ -0.41
CDX1P47902 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CDX1P47902 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC12.49□□□□□ -0.41
CDX1P47902 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CDX1P47902 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CDX1P47902 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 REXO1L8P-201ENST00000604378 1897 ntBASIC12.48□□□□□ -0.41
CDX1P47902 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC12.48□□□□□ -0.41
CDX1P47902 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.48□□□□□ -0.41
CDX1P47902 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC12.48□□□□□ -0.41
CDX1P47902 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.48□□□□□ -0.41
CDX1P47902 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC12.48□□□□□ -0.41
CDX1P47902 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
CDX1P47902 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
CDX1P47902 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
CDX1P47902 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 KLK8-202ENST00000320838 456 ntTSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC12.48□□□□□ -0.41
CDX1P47902 AC004987.2-201ENST00000395959 1148 ntBASIC12.48□□□□□ -0.41
CDX1P47902 AC236430.1-201ENST00000402231 743 ntBASIC12.48□□□□□ -0.41
CDX1P47902 MRPS18AP1-201ENST00000414458 589 ntBASIC12.48□□□□□ -0.41
CDX1P47902 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 AC243562.2-201ENST00000561247 970 ntBASIC12.48□□□□□ -0.41
CDX1P47902 LINC02560-201ENST00000596379 459 ntBASIC12.48□□□□□ -0.41
CDX1P47902 AL844908.2-201ENST00000609461 460 ntBASIC12.48□□□□□ -0.41
CDX1P47902 AL033527.5-202ENST00000641632 1098 ntBASIC12.48□□□□□ -0.41
CDX1P47902 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
CDX1P47902 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CDX1P47902 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CDX1P47902 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms