Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PUDPP3-201ENST00000445368 636 ntBASIC15.53■□□□□ 0.08
HMGA1P17096 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGA1P17096 CICP12-201ENST00000455801 843 ntBASIC15.53■□□□□ 0.08
HMGA1P17096 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGA1P17096 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGA1P17096 HLA-J-204ENST00000495278 958 ntBASIC15.53■□□□□ 0.08
HMGA1P17096 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGA1P17096 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
HMGA1P17096 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGA1P17096 KLK3-207ENST00000595952 969 ntTSL 3 BASIC15.53■□□□□ 0.08
HMGA1P17096 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.53■□□□□ 0.08
HMGA1P17096 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.53■□□□□ 0.08
HMGA1P17096 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGA1P17096 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.53■□□□□ 0.08
HMGA1P17096 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
HMGA1P17096 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
HMGA1P17096 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGA1P17096 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGA1P17096 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HMGA1P17096 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGA1P17096 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
HMGA1P17096 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGA1P17096 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGA1P17096 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC15.52■□□□□ 0.08
HMGA1P17096 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HMGA1P17096 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.52■□□□□ 0.08
HMGA1P17096 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGA1P17096 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGA1P17096 AL008718.2-201ENST00000609206 1313 ntBASIC15.52■□□□□ 0.08
HMGA1P17096 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGA1P17096 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.52■□□□□ 0.08
HMGA1P17096 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
HMGA1P17096 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HMGA1P17096 AC012441.2-201ENST00000444843 739 ntBASIC15.52■□□□□ 0.08
HMGA1P17096 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
HMGA1P17096 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.52■□□□□ 0.08
HMGA1P17096 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
HMGA1P17096 AL160314.3-201ENST00000556041 767 ntBASIC15.52■□□□□ 0.08
HMGA1P17096 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGA1P17096 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
HMGA1P17096 AC106872.11-201ENST00000605838 421 ntBASIC15.52■□□□□ 0.08
HMGA1P17096 AP000346.4-201ENST00000614827 381 ntBASIC15.52■□□□□ 0.08
HMGA1P17096 AC027601.3-201ENST00000622907 509 ntBASIC15.52■□□□□ 0.08
HMGA1P17096 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.52■□□□□ 0.08
HMGA1P17096 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.07
HMGA1P17096 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGA1P17096 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGA1P17096 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HMGA1P17096 MBLAC2-202ENST00000514906 1936 ntBASIC15.52■□□□□ 0.07
HMGA1P17096 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGA1P17096 LINC01101-201ENST00000622953 1884 ntBASIC15.52■□□□□ 0.07
HMGA1P17096 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.52■□□□□ 0.07
HMGA1P17096 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.52■□□□□ 0.07
HMGA1P17096 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
HMGA1P17096 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGA1P17096 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.52■□□□□ 0.07
HMGA1P17096 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.52■□□□□ 0.07
HMGA1P17096 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
HMGA1P17096 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGA1P17096 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
HMGA1P17096 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
HMGA1P17096 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
HMGA1P17096 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
HMGA1P17096 AC006486.2-201ENST00000624246 2199 ntBASIC15.51■□□□□ 0.07
HMGA1P17096 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 MIR769-201ENST00000390225 118 ntBASIC15.51■□□□□ 0.07
HMGA1P17096 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC15.51■□□□□ 0.07
HMGA1P17096 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGA1P17096 AC011742.3-201ENST00000439053 820 ntBASIC15.51■□□□□ 0.07
HMGA1P17096 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.51■□□□□ 0.07
HMGA1P17096 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC15.51■□□□□ 0.07
HMGA1P17096 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.51■□□□□ 0.07
HMGA1P17096 RNA5SP423-201ENST00000517127 109 ntBASIC15.51■□□□□ 0.07
HMGA1P17096 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
HMGA1P17096 AC105129.2-201ENST00000559536 390 ntBASIC15.51■□□□□ 0.07
HMGA1P17096 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.51■□□□□ 0.07
HMGA1P17096 AC097724.1-201ENST00000609581 426 ntBASIC15.51■□□□□ 0.07
HMGA1P17096 MIR6720-201ENST00000611664 98 ntBASIC15.51■□□□□ 0.07
HMGA1P17096 AP001505.2-201ENST00000616815 443 ntBASIC15.51■□□□□ 0.07
HMGA1P17096 AC100757.4-201ENST00000626934 759 ntBASIC15.51■□□□□ 0.07
HMGA1P17096 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
HMGA1P17096 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGA1P17096 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGA1P17096 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms