Protein–RNA interactions for Protein: Q9NR12

PDLIM7, PDZ and LIM domain protein 7, humanhuman

Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7Q9NR12 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 AC091951.1-201ENST00000512854 2465 ntBASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 OR6D1P-203ENST00000641209 4860 ntBASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 AC125604.1-201ENST00000496255 707 ntBASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 MESTP3-201ENST00000503460 968 ntBASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 IGLV3-15-201ENST00000518356 244 ntBASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 CFL1-206ENST00000527344 962 ntTSL 2 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 AC006453.1-201ENST00000636037 1257 ntBASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PDLIM7Q9NR12 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PDLIM7Q9NR12 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PDLIM7Q9NR12 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PDLIM7Q9NR12 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
PDLIM7Q9NR12 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PDLIM7Q9NR12 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
PDLIM7Q9NR12 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PDLIM7Q9NR12 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PDLIM7Q9NR12 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 AC026316.1-201ENST00000398900 414 ntBASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 AL353637.1-201ENST00000451571 732 ntBASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 TUBB8P8-201ENST00000458717 1058 ntBASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 RTN3P1-201ENST00000536295 711 ntBASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 AC103691.2-201ENST00000618824 433 ntBASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PDLIM7Q9NR12 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 CLUHP2-201ENST00000426660 1303 ntBASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 AC104640.1-201ENST00000562617 2109 ntBASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 ZBED1P1-201ENST00000502364 1930 ntBASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PDLIM7Q9NR12 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms