Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.5□□□□□ -0.25
MMP28Q9H239 AC027796.2-201ENST00000575326 344 ntBASIC13.5□□□□□ -0.25
MMP28Q9H239 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC13.5□□□□□ -0.25
MMP28Q9H239 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13.5□□□□□ -0.25
MMP28Q9H239 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.5□□□□□ -0.25
MMP28Q9H239 AL596442.2-201ENST00000610240 980 ntBASIC13.5□□□□□ -0.25
MMP28Q9H239 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC13.5□□□□□ -0.25
MMP28Q9H239 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.5□□□□□ -0.25
MMP28Q9H239 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
MMP28Q9H239 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
MMP28Q9H239 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
MMP28Q9H239 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.5□□□□□ -0.25
MMP28Q9H239 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MMP28Q9H239 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MMP28Q9H239 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MMP28Q9H239 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MMP28Q9H239 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
MMP28Q9H239 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
MMP28Q9H239 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
MMP28Q9H239 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.5□□□□□ -0.25
MMP28Q9H239 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.5□□□□□ -0.25
MMP28Q9H239 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
MMP28Q9H239 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
MMP28Q9H239 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
MMP28Q9H239 STK40-201ENST00000359297 4837 ntTSL 2 BASIC13.5□□□□□ -0.25
MMP28Q9H239 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
MMP28Q9H239 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.49□□□□□ -0.25
MMP28Q9H239 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
MMP28Q9H239 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC13.49□□□□□ -0.25
MMP28Q9H239 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
MMP28Q9H239 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
MMP28Q9H239 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.49□□□□□ -0.25
MMP28Q9H239 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 HMGN1P19-201ENST00000436976 333 ntBASIC13.49□□□□□ -0.25
MMP28Q9H239 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC13.49□□□□□ -0.25
MMP28Q9H239 AC245100.5-201ENST00000452108 331 ntBASIC13.49□□□□□ -0.25
MMP28Q9H239 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.49□□□□□ -0.25
MMP28Q9H239 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
MMP28Q9H239 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 AP002472.1-201ENST00000577490 586 ntBASIC13.49□□□□□ -0.25
MMP28Q9H239 MIR4313-201ENST00000580760 101 ntBASIC13.49□□□□□ -0.25
MMP28Q9H239 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 AL355385.1-201ENST00000606123 409 ntBASIC13.49□□□□□ -0.25
MMP28Q9H239 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
MMP28Q9H239 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC13.49□□□□□ -0.25
MMP28Q9H239 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.49□□□□□ -0.25
MMP28Q9H239 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC13.49□□□□□ -0.25
MMP28Q9H239 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC13.49□□□□□ -0.25
MMP28Q9H239 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
MMP28Q9H239 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
MMP28Q9H239 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
MMP28Q9H239 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
MMP28Q9H239 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
MMP28Q9H239 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.48□□□□□ -0.25
MMP28Q9H239 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
MMP28Q9H239 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms