Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 AC006486.2-201ENST00000624246 2199 ntBASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 BRWD1P1-201ENST00000401091 371 ntBASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 NDUFAB1P1-201ENST00000404262 460 ntBASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 AC004945.1-201ENST00000416738 983 ntBASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 AL391280.1-201ENST00000506969 1062 ntBASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 BTBD6P1-201ENST00000412176 1267 ntBASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 ACTBP11-201ENST00000436287 1126 ntBASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 PPY2P-201ENST00000582808 702 ntBASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CHMP4AQ9BY43 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 RN7SKP175-201ENST00000408472 289 ntBASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4AQ9BY43 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms