Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 SUOX-214ENST00000551841 906 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ABBA01031660.1-201ENST00000635219 756 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ME2P1-201ENST00000426028 1970 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 SOCS2P1-201ENST00000417727 557 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 RIT1-205ENST00000539040 919 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC138951.2-201ENST00000623455 1161 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MUM1-214ENST00000591806 4067 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 FBLN2-201ENST00000295760 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 OR2I1P-209ENST00000641730 5365 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AEBP1-201ENST00000223357 4081 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 NKAIN1P1-201ENST00000435754 582 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 BX284668.4-201ENST00000453917 508 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AL049840.4-201ENST00000602422 811 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AL008638.5-201ENST00000623814 1298 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 SNX1-214ENST00000625244 324 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 PPA1-206ENST00000625364 644 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 MID1IP1-204ENST00000614558 3781 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 HNRNPA1P48-202ENST00000565308 961 ntBASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 KRBA1-201ENST00000319551 4020 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 RNFT2-201ENST00000257575 3882 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SYNE1Q8NF91 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms