Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 PTENP1-202ENST00000532280 3996 ntBASIC12.71□□□□□ -0.38
PDLIM3Q53GG5 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 FAM220BP-201ENST00000377689 816 ntBASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AC234783.1-201ENST00000441761 496 ntBASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 ALG1L8P-201ENST00000533887 760 ntBASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AL390755.1-201ENST00000623716 2027 ntBASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC12.7□□□□□ -0.38
PDLIM3Q53GG5 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AC091951.1-201ENST00000512854 2465 ntBASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 SNX18-202ENST00000343017 3140 ntBASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 AL731571.1-201ENST00000617058 5428 ntBASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC12.69□□□□□ -0.38
PDLIM3Q53GG5 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms