Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC15.8■□□□□ 0.12
COL4A4P53420 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC15.8■□□□□ 0.12
COL4A4P53420 AC004837.1-201ENST00000446267 564 ntBASIC15.8■□□□□ 0.12
COL4A4P53420 AC026434.2-201ENST00000506094 1078 ntBASIC15.8■□□□□ 0.12
COL4A4P53420 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 NUDT4P2-201ENST00000578341 546 ntBASIC15.8■□□□□ 0.12
COL4A4P53420 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.8■□□□□ 0.12
COL4A4P53420 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL4A4P53420 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
COL4A4P53420 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL4A4P53420 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
COL4A4P53420 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.8■□□□□ 0.12
COL4A4P53420 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.8■□□□□ 0.12
COL4A4P53420 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.8■□□□□ 0.12
COL4A4P53420 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC15.8■□□□□ 0.12
COL4A4P53420 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC15.79■□□□□ 0.12
COL4A4P53420 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC15.79■□□□□ 0.12
COL4A4P53420 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC15.79■□□□□ 0.12
COL4A4P53420 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC15.79■□□□□ 0.12
COL4A4P53420 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC15.79■□□□□ 0.12
COL4A4P53420 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL4A4P53420 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
COL4A4P53420 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC15.79■□□□□ 0.12
COL4A4P53420 AC103810.10-201ENST00000606504 343 ntBASIC15.79■□□□□ 0.12
COL4A4P53420 MIR6720-201ENST00000611664 98 ntBASIC15.79■□□□□ 0.12
COL4A4P53420 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.79■□□□□ 0.12
COL4A4P53420 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.79■□□□□ 0.12
COL4A4P53420 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
COL4A4P53420 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.79■□□□□ 0.12
COL4A4P53420 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
COL4A4P53420 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.79■□□□□ 0.12
COL4A4P53420 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.79■□□□□ 0.12
COL4A4P53420 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.79■□□□□ 0.12
COL4A4P53420 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.79■□□□□ 0.12
COL4A4P53420 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL4A4P53420 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL4A4P53420 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.79■□□□□ 0.12
COL4A4P53420 AC012441.2-201ENST00000444843 739 ntBASIC15.79■□□□□ 0.12
COL4A4P53420 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
COL4A4P53420 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.79■□□□□ 0.12
COL4A4P53420 AL118516.1-201ENST00000564152 670 ntBASIC15.79■□□□□ 0.12
COL4A4P53420 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC15.79■□□□□ 0.12
COL4A4P53420 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL4A4P53420 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL4A4P53420 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL4A4P53420 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.79■□□□□ 0.12
COL4A4P53420 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
COL4A4P53420 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
COL4A4P53420 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL4A4P53420 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC15.78■□□□□ 0.12
COL4A4P53420 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC15.78■□□□□ 0.12
COL4A4P53420 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
COL4A4P53420 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.78■□□□□ 0.12
COL4A4P53420 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC15.78■□□□□ 0.12
COL4A4P53420 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC15.78■□□□□ 0.12
COL4A4P53420 C2orf69P1-201ENST00000563532 1093 ntBASIC15.78■□□□□ 0.12
COL4A4P53420 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC15.78■□□□□ 0.12
COL4A4P53420 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC15.78■□□□□ 0.12
COL4A4P53420 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC15.78■□□□□ 0.12
COL4A4P53420 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL4A4P53420 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 271.1 ms