Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC12.49□□□□□ -0.41
NKX2-1P43699 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC12.49□□□□□ -0.41
NKX2-1P43699 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 HLA-A-201ENST00000376802 1334 ntBASIC12.49□□□□□ -0.41
NKX2-1P43699 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
NKX2-1P43699 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 CSF3-203ENST00000394148 622 ntTSL 3 BASIC12.49□□□□□ -0.41
NKX2-1P43699 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC12.49□□□□□ -0.41
NKX2-1P43699 AC074386.1-202ENST00000463561 864 ntBASIC12.49□□□□□ -0.41
NKX2-1P43699 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.49□□□□□ -0.41
NKX2-1P43699 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.49□□□□□ -0.41
NKX2-1P43699 RNA5SP415-201ENST00000517246 115 ntBASIC12.49□□□□□ -0.41
NKX2-1P43699 IGHV3-22-201ENST00000520721 359 ntBASIC12.49□□□□□ -0.41
NKX2-1P43699 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 MAL2-202ENST00000531508 892 ntTSL 3 BASIC12.49□□□□□ -0.41
NKX2-1P43699 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
NKX2-1P43699 MAX-210ENST00000555419 765 ntTSL 5 BASIC12.49□□□□□ -0.41
NKX2-1P43699 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC12.49□□□□□ -0.41
NKX2-1P43699 AC099522.2-201ENST00000607001 744 ntBASIC12.49□□□□□ -0.41
NKX2-1P43699 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC12.49□□□□□ -0.41
NKX2-1P43699 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC12.49□□□□□ -0.41
NKX2-1P43699 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
NKX2-1P43699 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
NKX2-1P43699 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.49□□□□□ -0.41
NKX2-1P43699 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
NKX2-1P43699 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
NKX2-1P43699 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.48□□□□□ -0.41
NKX2-1P43699 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC12.48□□□□□ -0.41
NKX2-1P43699 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.48□□□□□ -0.41
NKX2-1P43699 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
NKX2-1P43699 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
NKX2-1P43699 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 SYS1-203ENST00000414310 795 ntTSL 3 BASIC12.48□□□□□ -0.41
NKX2-1P43699 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.48□□□□□ -0.41
NKX2-1P43699 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC12.48□□□□□ -0.41
NKX2-1P43699 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC12.48□□□□□ -0.41
NKX2-1P43699 AC009078.2-202ENST00000463353 338 ntBASIC12.48□□□□□ -0.41
NKX2-1P43699 AC079776.4-201ENST00000511039 504 ntBASIC12.48□□□□□ -0.41
NKX2-1P43699 CD63-204ENST00000546939 779 ntTSL 3 BASIC12.48□□□□□ -0.41
NKX2-1P43699 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.48□□□□□ -0.41
NKX2-1P43699 AC018845.2-201ENST00000568326 409 ntBASIC12.48□□□□□ -0.41
NKX2-1P43699 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC12.48□□□□□ -0.41
NKX2-1P43699 AP002472.1-201ENST00000577490 586 ntBASIC12.48□□□□□ -0.41
NKX2-1P43699 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC12.48□□□□□ -0.41
NKX2-1P43699 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC12.48□□□□□ -0.41
NKX2-1P43699 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
NKX2-1P43699 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms