Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC17.1■□□□□ 0.33
TPM4P67936 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC17.1■□□□□ 0.33
TPM4P67936 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TPM4P67936 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
TPM4P67936 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.1■□□□□ 0.33
TPM4P67936 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TPM4P67936 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.1■□□□□ 0.33
TPM4P67936 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.1■□□□□ 0.33
TPM4P67936 HIST3H2BA-201ENST00000436555 524 ntBASIC17.1■□□□□ 0.33
TPM4P67936 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.1■□□□□ 0.33
TPM4P67936 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.1■□□□□ 0.33
TPM4P67936 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC17.1■□□□□ 0.33
TPM4P67936 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
TPM4P67936 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC17.1■□□□□ 0.33
TPM4P67936 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
TPM4P67936 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 AC097359.2-201ENST00000604992 2389 ntBASIC17.1■□□□□ 0.33
TPM4P67936 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TPM4P67936 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.1■□□□□ 0.33
TPM4P67936 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.1■□□□□ 0.33
TPM4P67936 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TPM4P67936 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM4P67936 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TPM4P67936 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
TPM4P67936 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC17.09■□□□□ 0.33
TPM4P67936 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM4P67936 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM4P67936 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TPM4P67936 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
TPM4P67936 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.09■□□□□ 0.33
TPM4P67936 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM4P67936 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.09■□□□□ 0.33
TPM4P67936 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.09■□□□□ 0.33
TPM4P67936 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM4P67936 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.09■□□□□ 0.33
TPM4P67936 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.09■□□□□ 0.33
TPM4P67936 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.09■□□□□ 0.33
TPM4P67936 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.09■□□□□ 0.33
TPM4P67936 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 AC140113.2-201ENST00000604370 208 ntBASIC17.09■□□□□ 0.33
TPM4P67936 FAM197Y3-203ENST00000618346 717 ntBASIC17.09■□□□□ 0.33
TPM4P67936 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.09■□□□□ 0.33
TPM4P67936 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC17.09■□□□□ 0.33
TPM4P67936 AC015802.1-201ENST00000588104 1449 ntBASIC17.09■□□□□ 0.33
TPM4P67936 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
TPM4P67936 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM4P67936 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 AL359881.3-201ENST00000602640 1721 ntBASIC17.09■□□□□ 0.33
TPM4P67936 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM4P67936 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TPM4P67936 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM4P67936 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TPM4P67936 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC17.08■□□□□ 0.33
TPM4P67936 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.08■□□□□ 0.33
TPM4P67936 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TPM4P67936 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TPM4P67936 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.08■□□□□ 0.33
TPM4P67936 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
TPM4P67936 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.08■□□□□ 0.33
TPM4P67936 OS9-207ENST00000439210 1946 ntTSL 2 BASIC17.08■□□□□ 0.33
TPM4P67936 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TPM4P67936 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TPM4P67936 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC17.08■□□□□ 0.32
TPM4P67936 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
TPM4P67936 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.08■□□□□ 0.32
TPM4P67936 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms