Protein–RNA interactions for Protein: P35125

USP6, Ubiquitin carboxyl-terminal hydrolase 6, humanhuman

Predictions only

Length 1,406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP6P35125 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USP6P35125 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
USP6P35125 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP6P35125 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC20.08■□□□□ 0.81
USP6P35125 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC20.08■□□□□ 0.81
USP6P35125 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC20.08■□□□□ 0.81
USP6P35125 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USP6P35125 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP6P35125 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP6P35125 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
USP6P35125 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP6P35125 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP6P35125 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.08■□□□□ 0.81
USP6P35125 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 MIR557-201ENST00000385239 98 ntBASIC20.08■□□□□ 0.8
USP6P35125 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC20.08■□□□□ 0.8
USP6P35125 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
USP6P35125 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.8
USP6P35125 HNRNPA1P27-201ENST00000412087 955 ntBASIC20.08■□□□□ 0.8
USP6P35125 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC20.08■□□□□ 0.8
USP6P35125 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC20.08■□□□□ 0.8
USP6P35125 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC20.08■□□□□ 0.8
USP6P35125 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC20.08■□□□□ 0.8
USP6P35125 AC087045.2-201ENST00000606279 1003 ntBASIC20.08■□□□□ 0.8
USP6P35125 AC007881.3-201ENST00000608897 607 ntBASIC20.08■□□□□ 0.8
USP6P35125 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC20.08■□□□□ 0.8
USP6P35125 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
USP6P35125 LINC01101-201ENST00000622953 1884 ntBASIC20.08■□□□□ 0.8
USP6P35125 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP6P35125 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC20.07■□□□□ 0.8
USP6P35125 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
USP6P35125 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC20.07■□□□□ 0.8
USP6P35125 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
USP6P35125 AC074138.1-201ENST00000611182 1303 ntBASIC20.07■□□□□ 0.8
USP6P35125 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC20.07■□□□□ 0.8
USP6P35125 AL627231.1-201ENST00000394467 1125 ntBASIC20.07■□□□□ 0.8
USP6P35125 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
USP6P35125 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 CFL1-206ENST00000527344 962 ntTSL 2 BASIC20.07■□□□□ 0.8
USP6P35125 AC003686.1-201ENST00000550956 1034 ntBASIC20.07■□□□□ 0.8
USP6P35125 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC20.07■□□□□ 0.8
USP6P35125 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC20.07■□□□□ 0.8
USP6P35125 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC20.07■□□□□ 0.8
USP6P35125 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP6P35125 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
USP6P35125 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC20.06■□□□□ 0.8
USP6P35125 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
USP6P35125 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC20.06■□□□□ 0.8
USP6P35125 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 API5-203ENST00000455725 2257 ntTSL 2 BASIC20.06■□□□□ 0.8
USP6P35125 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.06■□□□□ 0.8
USP6P35125 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
USP6P35125 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC20.06■□□□□ 0.8
USP6P35125 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
USP6P35125 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC20.06■□□□□ 0.8
USP6P35125 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC20.06■□□□□ 0.8
USP6P35125 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC20.06■□□□□ 0.8
USP6P35125 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
USP6P35125 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC20.06■□□□□ 0.8
USP6P35125 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
USP6P35125 NAT9-220ENST00000582870 896 ntTSL 5 BASIC20.06■□□□□ 0.8
USP6P35125 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP6P35125 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms