Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC11.83□□□□□ -0.52
CXCL1P09341 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
CXCL1P09341 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC11.83□□□□□ -0.52
CXCL1P09341 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC11.83□□□□□ -0.52
CXCL1P09341 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC11.83□□□□□ -0.52
CXCL1P09341 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC11.83□□□□□ -0.52
CXCL1P09341 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC11.83□□□□□ -0.52
CXCL1P09341 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC11.83□□□□□ -0.52
CXCL1P09341 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC11.83□□□□□ -0.52
CXCL1P09341 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC11.83□□□□□ -0.52
CXCL1P09341 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC11.83□□□□□ -0.52
CXCL1P09341 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
CXCL1P09341 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
CXCL1P09341 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC11.83□□□□□ -0.52
CXCL1P09341 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 FTO-214ENST00000636218 2227 ntTSL 5 BASIC11.83□□□□□ -0.52
CXCL1P09341 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC11.83□□□□□ -0.52
CXCL1P09341 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CXCL1P09341 AC138969.3-201ENST00000546612 1459 ntBASIC11.83□□□□□ -0.52
CXCL1P09341 AC138932.2-201ENST00000548268 1459 ntBASIC11.83□□□□□ -0.52
CXCL1P09341 AC126755.4-201ENST00000549796 1459 ntBASIC11.83□□□□□ -0.52
CXCL1P09341 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
CXCL1P09341 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CXCL1P09341 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 TP73-207ENST00000378290 1831 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CXCL1P09341 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
CXCL1P09341 SAPCD2P3-201ENST00000455031 850 ntBASIC11.82□□□□□ -0.52
CXCL1P09341 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 KRT18P31-201ENST00000506277 1292 ntBASIC11.82□□□□□ -0.52
CXCL1P09341 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 OR7E14P-202ENST00000530490 1290 ntBASIC11.82□□□□□ -0.52
CXCL1P09341 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 AP000845.1-201ENST00000581677 2131 ntBASIC11.82□□□□□ -0.52
CXCL1P09341 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC11.82□□□□□ -0.52
CXCL1P09341 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC11.82□□□□□ -0.52
CXCL1P09341 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC11.82□□□□□ -0.52
CXCL1P09341 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 KRT8P22-201ENST00000562317 1415 ntBASIC11.82□□□□□ -0.52
CXCL1P09341 CICP1-201ENST00000416803 2410 ntBASIC11.82□□□□□ -0.52
CXCL1P09341 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
CXCL1P09341 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC11.82□□□□□ -0.52
CXCL1P09341 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC11.82□□□□□ -0.52
CXCL1P09341 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CXCL1P09341 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
CXCL1P09341 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
CXCL1P09341 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CXCL1P09341 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC11.81□□□□□ -0.52
CXCL1P09341 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms