Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
HMGB3O15347 HSPA7-201ENST00000445535 1927 ntBASIC12.31□□□□□ -0.44
HMGB3O15347 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HMGB3O15347 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.3□□□□□ -0.44
HMGB3O15347 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HMGB3O15347 COL6A4P2-202ENST00000504443 2753 ntBASIC12.3□□□□□ -0.44
HMGB3O15347 KIAA0513-206ENST00000566428 7772 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 SEMA4D-212ENST00000450295 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 AP001267.2-201ENST00000532619 2086 ntBASIC12.3□□□□□ -0.44
HMGB3O15347 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC12.3□□□□□ -0.44
HMGB3O15347 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HMGB3O15347 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
HMGB3O15347 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
HMGB3O15347 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC12.3□□□□□ -0.44
HMGB3O15347 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC12.3□□□□□ -0.44
HMGB3O15347 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
HMGB3O15347 FAM8A3P-201ENST00000427218 844 ntBASIC12.3□□□□□ -0.44
HMGB3O15347 RPS2P1-201ENST00000434010 821 ntBASIC12.3□□□□□ -0.44
HMGB3O15347 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC12.3□□□□□ -0.44
HMGB3O15347 CXCL1P1-201ENST00000502804 216 ntBASIC12.3□□□□□ -0.44
HMGB3O15347 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC12.3□□□□□ -0.44
HMGB3O15347 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC12.3□□□□□ -0.44
HMGB3O15347 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC12.3□□□□□ -0.44
HMGB3O15347 CIPC-205ENST00000555437 566 ntTSL 3 BASIC12.3□□□□□ -0.44
HMGB3O15347 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC12.3□□□□□ -0.44
HMGB3O15347 IRF8-202ENST00000562492 946 ntTSL 3 BASIC12.3□□□□□ -0.44
HMGB3O15347 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC12.3□□□□□ -0.44
HMGB3O15347 AC087388.1-201ENST00000571370 1112 ntBASIC12.3□□□□□ -0.44
HMGB3O15347 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC12.3□□□□□ -0.44
HMGB3O15347 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC12.3□□□□□ -0.44
HMGB3O15347 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC12.3□□□□□ -0.44
HMGB3O15347 MIR1199-201ENST00000621445 119 ntBASIC12.3□□□□□ -0.44
HMGB3O15347 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC12.3□□□□□ -0.44
HMGB3O15347 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
HMGB3O15347 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
HMGB3O15347 USP20-202ENST00000358355 4371 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 MRVI1-201ENST00000423302 6126 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
HMGB3O15347 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.3□□□□□ -0.44
HMGB3O15347 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC12.3□□□□□ -0.44
HMGB3O15347 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 MICAL2-203ENST00000379612 6625 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HMGB3O15347 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 ZC3H13-202ENST00000282007 6412 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HMGB3O15347 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
HMGB3O15347 ACTN2-201ENST00000366578 4863 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
HMGB3O15347 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC12.29□□□□□ -0.44
HMGB3O15347 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.29□□□□□ -0.44
HMGB3O15347 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HMGB3O15347 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 VDR-202ENST00000395324 4762 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
HMGB3O15347 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms