Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP4CQ96CF2 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP4CQ96CF2 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP4CQ96CF2 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CHMP4CQ96CF2 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 MIR658-201ENST00000385210 100 ntBASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 PIGL-212ENST00000581006 554 ntTSL 4 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 MIR4259-201ENST00000584466 101 ntBASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 AL512343.1-201ENST00000605837 169 ntBASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 WNT11-204ENST00000621122 789 ntTSL 5 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP4CQ96CF2 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 AL359258.3-201ENST00000622910 2331 ntBASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 DBET-201ENST00000630918 3363 ntBASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 AC018665.1-201ENST00000622927 1362 ntBASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP4CQ96CF2 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC18.16■□□□□ 0.5
CHMP4CQ96CF2 TNRC18P2-201ENST00000417666 2714 ntBASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms