Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC12.53□□□□□ -0.4
NKX2-1P43699 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
NKX2-1P43699 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.53□□□□□ -0.4
NKX2-1P43699 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.53□□□□□ -0.4
NKX2-1P43699 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
NKX2-1P43699 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.52□□□□□ -0.4
NKX2-1P43699 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.52□□□□□ -0.4
NKX2-1P43699 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
NKX2-1P43699 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
NKX2-1P43699 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
NKX2-1P43699 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
NKX2-1P43699 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
NKX2-1P43699 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
NKX2-1P43699 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.52□□□□□ -0.4
NKX2-1P43699 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
NKX2-1P43699 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
NKX2-1P43699 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
NKX2-1P43699 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.52□□□□□ -0.4
NKX2-1P43699 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
NKX2-1P43699 AC055811.4-201ENST00000624039 1754 ntBASIC12.52□□□□□ -0.41
NKX2-1P43699 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
NKX2-1P43699 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC12.52□□□□□ -0.41
NKX2-1P43699 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC12.52□□□□□ -0.41
NKX2-1P43699 MRPL3P1-201ENST00000400109 1033 ntBASIC12.52□□□□□ -0.41
NKX2-1P43699 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC12.52□□□□□ -0.41
NKX2-1P43699 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC12.52□□□□□ -0.41
NKX2-1P43699 SMN2-210ENST00000511812 867 ntTSL 2 BASIC12.52□□□□□ -0.41
NKX2-1P43699 AC112191.1-201ENST00000523689 701 ntBASIC12.52□□□□□ -0.41
NKX2-1P43699 SUOX-214ENST00000551841 906 ntTSL 3 BASIC12.52□□□□□ -0.41
NKX2-1P43699 CMC2-214ENST00000565925 640 ntTSL 5 BASIC12.52□□□□□ -0.41
NKX2-1P43699 LITAF-211ENST00000572255 516 ntTSL 4 BASIC12.52□□□□□ -0.41
NKX2-1P43699 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
NKX2-1P43699 SLC25A6P4-201ENST00000586535 553 ntBASIC12.52□□□□□ -0.41
NKX2-1P43699 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
NKX2-1P43699 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC12.52□□□□□ -0.41
NKX2-1P43699 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC12.52□□□□□ -0.41
NKX2-1P43699 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC12.52□□□□□ -0.41
NKX2-1P43699 AC116407.3-201ENST00000623905 1129 ntBASIC12.52□□□□□ -0.41
NKX2-1P43699 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
NKX2-1P43699 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.52□□□□□ -0.41
NKX2-1P43699 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC12.52□□□□□ -0.41
NKX2-1P43699 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
NKX2-1P43699 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC12.52□□□□□ -0.41
NKX2-1P43699 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC12.52□□□□□ -0.41
NKX2-1P43699 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
NKX2-1P43699 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC12.52□□□□□ -0.41
NKX2-1P43699 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.52□□□□□ -0.41
NKX2-1P43699 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC12.52□□□□□ -0.41
NKX2-1P43699 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
NKX2-1P43699 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
NKX2-1P43699 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
NKX2-1P43699 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
NKX2-1P43699 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
NKX2-1P43699 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
NKX2-1P43699 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
NKX2-1P43699 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
NKX2-1P43699 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
NKX2-1P43699 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.51□□□□□ -0.41
NKX2-1P43699 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.51□□□□□ -0.41
NKX2-1P43699 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
NKX2-1P43699 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
NKX2-1P43699 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
NKX2-1P43699 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
NKX2-1P43699 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
NKX2-1P43699 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
NKX2-1P43699 TPT1P11-201ENST00000458482 498 ntBASIC12.51□□□□□ -0.41
NKX2-1P43699 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.51□□□□□ -0.41
NKX2-1P43699 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC12.51□□□□□ -0.41
NKX2-1P43699 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC12.51□□□□□ -0.41
NKX2-1P43699 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms