Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 RPL37AP1-201ENST00000412502 279 ntBASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 TOMM22P5-201ENST00000416399 439 ntBASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 AC004835.2-201ENST00000603762 682 ntBASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TRIM49D1C9J1S8 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 SPDYE7P-202ENST00000420373 878 ntBASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 SAMD11P1-201ENST00000571429 661 ntBASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 AC152010.1-201ENST00000415779 2006 ntBASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.29■□□□□ 0.04
TRIM49D1C9J1S8 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 OS9-207ENST00000439210 1946 ntTSL 2 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TRIM49D1C9J1S8 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms