Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 TOMM22P5-201ENST00000416399 439 ntBASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 AC097359.2-201ENST00000604992 2389 ntBASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CLHC1Q8NHS4 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 AC140878.1-201ENST00000565277 250 ntBASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 AC138969.3-201ENST00000546612 1459 ntBASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 AC138932.2-201ENST00000548268 1459 ntBASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 AC126755.4-201ENST00000549796 1459 ntBASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CLHC1Q8NHS4 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms