Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC10.79□□□□□ -0.68
CKS1BP61024 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC10.79□□□□□ -0.68
CKS1BP61024 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC10.79□□□□□ -0.68
CKS1BP61024 SNIP1-201ENST00000296215 4605 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC10.79□□□□□ -0.68
CKS1BP61024 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
CKS1BP61024 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 SLC4A1APP2-201ENST00000424054 1259 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 RPS2P1-201ENST00000434010 821 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 AL513480.1-201ENST00000451731 511 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 AC245100.5-201ENST00000452108 331 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 KRT18P34-201ENST00000488218 1270 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 IGHV3-65-201ENST00000523210 341 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 AP002469.2-201ENST00000531724 424 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 AL031432.2-201ENST00000566714 459 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 AL928711.1-201ENST00000570165 459 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 MIR3909-201ENST00000579518 119 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 PRR29-207ENST00000580752 458 ntTSL 3 BASIC10.79□□□□□ -0.68
CKS1BP61024 AL356488.2-201ENST00000602755 427 ntBASIC10.79□□□□□ -0.68
CKS1BP61024 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC10.79□□□□□ -0.68
CKS1BP61024 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC10.79□□□□□ -0.68
CKS1BP61024 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
CKS1BP61024 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC10.79□□□□□ -0.68
CKS1BP61024 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC10.79□□□□□ -0.68
CKS1BP61024 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC10.79□□□□□ -0.68
CKS1BP61024 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC10.79□□□□□ -0.68
CKS1BP61024 UNC13B-207ENST00000619578 6426 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
CKS1BP61024 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC10.79□□□□□ -0.68
CKS1BP61024 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC10.78□□□□□ -0.68
CKS1BP61024 AL591122.2-201ENST00000624125 1853 ntBASIC10.78□□□□□ -0.68
CKS1BP61024 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 AC089987.1-201ENST00000551654 2209 ntBASIC10.78□□□□□ -0.68
CKS1BP61024 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
CKS1BP61024 ST6GAL2-201ENST00000361686 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
CKS1BP61024 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
CKS1BP61024 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC10.78□□□□□ -0.68
CKS1BP61024 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 SLC28A1-203ENST00000394573 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
CKS1BP61024 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 AC008677.1-201ENST00000519230 1561 ntBASIC10.78□□□□□ -0.68
CKS1BP61024 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC10.78□□□□□ -0.68
CKS1BP61024 AC011477.6-201ENST00000604980 1927 ntBASIC10.78□□□□□ -0.68
CKS1BP61024 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC10.78□□□□□ -0.68
CKS1BP61024 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CKS1BP61024 KDM3A-216ENST00000542128 4311 ntTSL 5 BASIC10.78□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms