Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
GFRA1P56159 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
GFRA1P56159 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
GFRA1P56159 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
GFRA1P56159 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
GFRA1P56159 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.59□□□□□ -0.23
GFRA1P56159 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.59□□□□□ -0.23
GFRA1P56159 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.59□□□□□ -0.23
GFRA1P56159 AL355994.2-201ENST00000447882 704 ntBASIC13.59□□□□□ -0.23
GFRA1P56159 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
GFRA1P56159 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.59□□□□□ -0.23
GFRA1P56159 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.59□□□□□ -0.23
GFRA1P56159 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.59□□□□□ -0.23
GFRA1P56159 AC106820.3-201ENST00000561653 397 ntBASIC13.59□□□□□ -0.23
GFRA1P56159 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.59□□□□□ -0.23
GFRA1P56159 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.59□□□□□ -0.23
GFRA1P56159 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
GFRA1P56159 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.59□□□□□ -0.23
GFRA1P56159 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.59□□□□□ -0.23
GFRA1P56159 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC13.59□□□□□ -0.23
GFRA1P56159 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
GFRA1P56159 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
GFRA1P56159 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.59□□□□□ -0.23
GFRA1P56159 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 AC092384.3-202ENST00000564646 2873 ntBASIC13.59□□□□□ -0.23
GFRA1P56159 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.59□□□□□ -0.23
GFRA1P56159 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.59□□□□□ -0.23
GFRA1P56159 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
GFRA1P56159 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
GFRA1P56159 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
GFRA1P56159 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.59□□□□□ -0.23
GFRA1P56159 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.58□□□□□ -0.23
GFRA1P56159 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
GFRA1P56159 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.58□□□□□ -0.23
GFRA1P56159 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
GFRA1P56159 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
GFRA1P56159 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
GFRA1P56159 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.58□□□□□ -0.24
GFRA1P56159 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
GFRA1P56159 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.58□□□□□ -0.24
GFRA1P56159 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.58□□□□□ -0.24
GFRA1P56159 CNN2P10-201ENST00000443067 918 ntBASIC13.58□□□□□ -0.24
GFRA1P56159 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.58□□□□□ -0.24
GFRA1P56159 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.58□□□□□ -0.24
GFRA1P56159 AP003171.2-201ENST00000528208 925 ntBASIC13.58□□□□□ -0.24
GFRA1P56159 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC13.58□□□□□ -0.24
GFRA1P56159 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.58□□□□□ -0.24
GFRA1P56159 OR10B1P-201ENST00000601666 907 ntBASIC13.58□□□□□ -0.24
GFRA1P56159 AC009542.2-202ENST00000619004 1067 ntBASIC13.58□□□□□ -0.24
GFRA1P56159 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
GFRA1P56159 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
GFRA1P56159 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 REXO1L6P-201ENST00000603433 1515 ntBASIC13.58□□□□□ -0.24
GFRA1P56159 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC13.58□□□□□ -0.24
GFRA1P56159 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
GFRA1P56159 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.58□□□□□ -0.24
GFRA1P56159 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms