Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPHP4O75161 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
NPHP4O75161 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC20.79■□□□□ 0.92
NPHP4O75161 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC20.79■□□□□ 0.92
NPHP4O75161 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP4O75161 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC20.79■□□□□ 0.92
NPHP4O75161 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC20.79■□□□□ 0.92
NPHP4O75161 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 RN7SL277P-201ENST00000481521 288 ntBASIC20.79■□□□□ 0.92
NPHP4O75161 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC20.79■□□□□ 0.92
NPHP4O75161 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP4O75161 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 SIGLEC22P-201ENST00000599104 714 ntBASIC20.79■□□□□ 0.92
NPHP4O75161 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC20.79■□□□□ 0.92
NPHP4O75161 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP4O75161 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP4O75161 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
NPHP4O75161 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP4O75161 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC20.79■□□□□ 0.92
NPHP4O75161 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP4O75161 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP4O75161 REXO1L2P-201ENST00000425429 2069 ntBASIC20.79■□□□□ 0.92
NPHP4O75161 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
NPHP4O75161 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP4O75161 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPHP4O75161 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP4O75161 HLA-DPA2-205ENST00000433582 733 ntBASIC20.78■□□□□ 0.92
NPHP4O75161 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC20.78■□□□□ 0.92
NPHP4O75161 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 MBP-238ENST00000580402 915 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP4O75161 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
NPHP4O75161 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
NPHP4O75161 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP4O75161 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP4O75161 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.78■□□□□ 0.92
NPHP4O75161 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 AC092127.1-201ENST00000567093 3455 ntBASIC20.78■□□□□ 0.92
NPHP4O75161 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP4O75161 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP4O75161 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 PYY2-201ENST00000315776 282 ntBASIC20.78■□□□□ 0.92
NPHP4O75161 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
NPHP4O75161 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPHP4O75161 MIR1301-201ENST00000408518 82 ntBASIC20.78■□□□□ 0.92
NPHP4O75161 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC20.78■□□□□ 0.92
NPHP4O75161 AC023141.7-201ENST00000430646 407 ntBASIC20.78■□□□□ 0.92
NPHP4O75161 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 RN7SL582P-201ENST00000491078 279 ntBASIC20.78■□□□□ 0.92
NPHP4O75161 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC20.78■□□□□ 0.92
NPHP4O75161 RN7SL665P-201ENST00000578793 300 ntBASIC20.78■□□□□ 0.92
NPHP4O75161 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.78■□□□□ 0.92
NPHP4O75161 AC013726.1-201ENST00000563747 2285 ntBASIC20.77■□□□□ 0.92
NPHP4O75161 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP4O75161 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP4O75161 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP4O75161 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.77■□□□□ 0.92
NPHP4O75161 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP4O75161 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP4O75161 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP4O75161 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC20.77■□□□□ 0.92
NPHP4O75161 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC20.77■□□□□ 0.92
NPHP4O75161 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC20.77■□□□□ 0.92
NPHP4O75161 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP4O75161 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
NPHP4O75161 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
NPHP4O75161 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP4O75161 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NPHP4O75161 AC012313.1-201ENST00000593393 3059 ntBASIC20.77■□□□□ 0.92
NPHP4O75161 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP4O75161 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
NPHP4O75161 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC20.77■□□□□ 0.91
NPHP4O75161 AC018638.5-201ENST00000450885 754 ntBASIC20.77■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms