Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HPS3Q969F9 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HPS3Q969F9 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.89■□□□□ 0.29
HPS3Q969F9 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HPS3Q969F9 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HPS3Q969F9 AL391825.1-201ENST00000457671 1364 ntBASIC16.89■□□□□ 0.29
HPS3Q969F9 INTS4P1-203ENST00000641008 3683 ntBASIC16.89■□□□□ 0.29
HPS3Q969F9 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
HPS3Q969F9 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
HPS3Q969F9 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.88■□□□□ 0.29
HPS3Q969F9 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.88■□□□□ 0.29
HPS3Q969F9 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.88■□□□□ 0.29
HPS3Q969F9 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HPS3Q969F9 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
HPS3Q969F9 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.88■□□□□ 0.29
HPS3Q969F9 RNU1-114P-201ENST00000365297 166 ntBASIC16.88■□□□□ 0.29
HPS3Q969F9 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HPS3Q969F9 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.88■□□□□ 0.29
HPS3Q969F9 AL442647.2-201ENST00000429864 857 ntBASIC16.88■□□□□ 0.29
HPS3Q969F9 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 TERF1P3-201ENST00000505638 1227 ntBASIC16.88■□□□□ 0.29
HPS3Q969F9 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.88■□□□□ 0.29
HPS3Q969F9 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 AC093813.1-201ENST00000605066 256 ntBASIC16.88■□□□□ 0.29
HPS3Q969F9 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 AC005252.2-201ENST00000624630 1141 ntBASIC16.88■□□□□ 0.29
HPS3Q969F9 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.88■□□□□ 0.29
HPS3Q969F9 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.88■□□□□ 0.29
HPS3Q969F9 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
HPS3Q969F9 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
HPS3Q969F9 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HPS3Q969F9 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.87■□□□□ 0.29
HPS3Q969F9 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 AL390755.1-201ENST00000623716 2027 ntBASIC16.87■□□□□ 0.29
HPS3Q969F9 AC140479.7-201ENST00000636301 2332 ntBASIC16.87■□□□□ 0.29
HPS3Q969F9 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.87■□□□□ 0.29
HPS3Q969F9 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HPS3Q969F9 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HPS3Q969F9 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.87■□□□□ 0.29
HPS3Q969F9 AC087499.6-201ENST00000411576 835 ntBASIC16.87■□□□□ 0.29
HPS3Q969F9 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.87■□□□□ 0.29
HPS3Q969F9 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.87■□□□□ 0.29
HPS3Q969F9 RPL13AP25-201ENST00000484130 612 ntBASIC16.87■□□□□ 0.29
HPS3Q969F9 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.87■□□□□ 0.29
HPS3Q969F9 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.87■□□□□ 0.29
HPS3Q969F9 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.87■□□□□ 0.29
HPS3Q969F9 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.87■□□□□ 0.29
HPS3Q969F9 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.87■□□□□ 0.29
HPS3Q969F9 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.87■□□□□ 0.29
HPS3Q969F9 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.87■□□□□ 0.29
HPS3Q969F9 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.87■□□□□ 0.29
HPS3Q969F9 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
HPS3Q969F9 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.87■□□□□ 0.29
HPS3Q969F9 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HPS3Q969F9 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
HPS3Q969F9 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms