Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CCDC144BQ3MJ40 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC144BQ3MJ40 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC144BQ3MJ40 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC144BQ3MJ40 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
CCDC144BQ3MJ40 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC144BQ3MJ40 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.71■□□□□ 0.42
CCDC144BQ3MJ40 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.71■□□□□ 0.42
CCDC144BQ3MJ40 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC144BQ3MJ40 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 AC018892.3-201ENST00000623986 2499 ntBASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 AC026954.1-201ENST00000429771 1293 ntBASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 AC108725.1-201ENST00000495472 409 ntBASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC144BQ3MJ40 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms