Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 FNTAP2-201ENST00000430308 634 ntBASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 EIF3FP3-201ENST00000434851 1086 ntBASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 HOMER2P2-201ENST00000451621 847 ntBASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 UPF3AP2-201ENST00000457924 1132 ntBASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 AL513477.1-201ENST00000602865 2407 ntBASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 MIR6727-201ENST00000620702 65 ntBASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HDDC3Q8N4P3 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 AP006547.1-201ENST00000563435 692 ntBASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 AC005695.3-201ENST00000614522 232 ntBASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 HYMAI-201ENST00000635591 3347 ntBASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HDDC3Q8N4P3 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 CICP11-201ENST00000434745 2827 ntBASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 AC090616.6-203ENST00000579186 1945 ntBASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 ADM-202ENST00000524948 584 ntTSL 2 BASIC15.28■□□□□ 0.04
HDDC3Q8N4P3 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms